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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal Structure of the Prototype Foamy Virus Intasome with a 2-Pyridinone Aminal Inhibitor

Results of the assignment of 34 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
014ztf_C_DA1_DT2NANNANT01.10BB07
024ztf_C_DT2_DT3BBwBB16330.69BB16
034ztf_C_DT3_DG4NANNANT00.54OP17
044ztf_C_DG4_DT5BBBBB01260.23BB01
054ztf_C_DT5_DC6A-BAB01110.36AB01
064ztf_C_DC6_DA7BB2BB07680.35BB07
074ztf_C_DA7_DT8B-ABA05850.15BA05
084ztf_C_DT8_DG9A-BAB03610.35AB03
094ztf_C_DG9_DG10BB2BB08820.25BB08
104ztf_C_DG10_DA11BBBBB00740.18BB00
114ztf_C_DA11_DA12BBBBB00830.17BB00
124ztf_C_DA12_DT13BBBBB01720.19BB01
134ztf_C_DT13_DT14BBBBB01770.23BB01
144ztf_C_DT14_DT15BBBBB00880.16BB00
154ztf_C_DT15_DC16BBBBB00830.18BB00
164ztf_C_DC16_DG17BBBBB00650.30BB00
174ztf_C_DG17_DC18B-ABA05680.23BA05
184ztf_C_DC18_DA19BBBBB01410.26BB01
194ztf_D_DT1_DG2NANNANT00.53BB00
204ztf_D_DG2_DC3B-ABA08700.28BA08
214ztf_D_DC3_DG4BBBBB00110.42BB00
224ztf_D_DG4_DA5BBBBB00880.16BB00
234ztf_D_DA5_DA6B12BB04650.20BB04
244ztf_D_DA6_DA7BBBBB00820.14BB00
254ztf_D_DA7_DT8BBBBB01840.22BB01
264ztf_D_DT8_DT9BBBBB01770.20BB01
274ztf_D_DT9_DC10BBBBB00790.18BB00
284ztf_D_DC10_DC11BBBBB00760.34BB00
294ztf_D_DC11_DA12BB2BB07920.25BB07
304ztf_D_DA12_DT13BBBBB00600.23BB00
314ztf_D_DT13_DG14BBBBB00680.25BB00
324ztf_D_DG14_DA15B12BB04820.22BB04
334ztf_D_DA15_DC16B-ABA08670.23BA08
344ztf_D_DC16_DA17NANNANT01.43IC03

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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