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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Antitoxin Phd from phage P1 in complex with its operator DNA inverted repeat

Results of the assignment of 50 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
014zm0_E_DC2_DT3NANNANT00.93AA03
024zm0_E_DT3_DT4A-BAB03780.24AB03
034zm0_E_DT4_DG5B12BB04690.28BB04
044zm0_E_DG5_DT6BBBBB00110.35BB00
054zm0_E_DT6_DG7BBBBB01720.29BB01
064zm0_E_DG7_DT8B-ABA05740.25BA05
074zm0_E_DT8_DA9miBBB10180.26BB10
084zm0_E_DA9_DC10miBBB10790.33BB10
094zm0_E_DC10_DA11BBBBB00570.29BB00
104zm0_E_DA11_DC12B12BB04290.23BB04
114zm0_E_DC12_DA13BBBBB00610.27BB00
124zm0_E_DA13_DT14B-ABA01200.29BA01
134zm0_F_DC1_DA2BBBBB00840.18BB00
144zm0_F_DA2_DT3BBBBB00910.15BB00
154zm0_F_DT3_DG4B12BB04710.23BB04
164zm0_F_DG4_DT5BBBBB00510.25BB00
174zm0_F_DT5_DG6B12BB04510.18BB04
184zm0_F_DG6_DT7BBBBB01540.32BB01
194zm0_F_DT7_DA8miBBB10340.26BB10
204zm0_F_DA8_DC9B-ABA08730.27BA08
214zm0_F_DC9_DA10A-BAB03740.26AB03
224zm0_F_DA10_DC11B12BB04250.25BB04
234zm0_F_DC11_DA12BBBBB00530.26BB00
244zm0_F_DA12_DA13BBBBB00800.20BB00
254zm0_G_DG1_DC2NANNANT00.45BA08
264zm0_G_DC2_DT3A-BAB05220.22AB05
274zm0_G_DT3_DT4BBBBB00810.23BB00
284zm0_G_DT4_DG5B12BB04670.26BB04
294zm0_G_DG5_DT6BBBBB00130.33BB00
304zm0_G_DT6_DG7BBBBB01740.28BB01
314zm0_G_DG7_DT8B-ABA05740.24BA05
324zm0_G_DT8_DA9miBBB10170.27BB10
334zm0_G_DA9_DC10miBBB10780.33BB10
344zm0_G_DC10_DA11BBBBB00570.29BB00
354zm0_G_DA11_DC12B12BB04370.24BB04
364zm0_G_DC12_DA13BBBBB00640.26BB00
374zm0_G_DA13_DT14B-ABA01270.23BA01
384zm0_H_DC1_DA2NANNANT00.81BB00
394zm0_H_DA2_DT3BBBBB00920.14BB00
404zm0_H_DT3_DG4B12BB04740.23BB04
414zm0_H_DG4_DT5BBBBB00480.27BB00
424zm0_H_DT5_DG6B12BB04540.18BB04
434zm0_H_DG6_DT7BBBBB01550.32BB01
444zm0_H_DT7_DA8miBBB10350.26BB10
454zm0_H_DA8_DC9B-ABA08730.27BA08
464zm0_H_DC9_DA10A-BAB03740.25AB03
474zm0_H_DA10_DC11B12BB04190.25BB04
484zm0_H_DC11_DA12BBBBB00500.26BB00
494zm0_H_DA12_DA13BBBBB00790.20BB00
504zm0_H_DA13_DG14NANNANT00.66BA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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