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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Quinolone(Moxifloxacin)-DNA cleavage complex of gyrase from S. pneumoniae

Results of the assignment of 36 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
014z2c_E_DA7_DC8NANNANT00.55BB03
024z2c_E_DC8_DG9A-BAB02260.51AB02
034z2c_E_DG9_DT10BBBBB00180.46BB00
044z2c_E_DT10_DT11B-ABA08270.27BA08
054z2c_E_DT11_DG12A-BAB01120.39AB01
064z2c_E_DG12_DT13NANNANT00.42BB08
074z2c_E_DT13_DA14NANNANT00.43AA01
084z2c_E_DA14_DT15A-BAB05730.25AB05
094z2c_F_DG1_DA2NANNANT00.68BB02
104z2c_F_DA2_DT3B-ABA05190.42BA05
114z2c_F_DT3_DC4NANNANT00.35AB02
124z2c_F_DC4_DA5NANNANT00.63AB01
134z2c_F_DA5_DT6B-ABA01370.26BA01
144z2c_F_DT6_DA7A-BAB01500.31AB01
154z2c_F_DA7_DC8NANNANT00.56BB00
164z2c_F_DC8_DA9NANNANT00.76BB02
174z2c_F_DA9_DA10BBBBB00260.29BB00
184z2c_F_DA10_DC11B-ABA01250.20BA01
194z2c_F_DC11_DG12BBBBB01520.19BB01
204z2c_F_DG12_DT13NANNANT00.32BB10
214z2c_H_DG1_DA2NANNANT00.79BB08
224z2c_H_DA2_DT3NANNANT00.37BB10
234z2c_H_DT3_DC4NANNANT00.54AB02
244z2c_H_DC4_DA5ICLIC02110.57IC02
254z2c_H_DA5_DT6B-ABA05740.22BA05
264z2c_H_DT6_DA7A-BAB01320.39AB01
274z2c_H_DA7_DC8NANNANT00.39BA05
284z2c_H_DC8_DA9NANNANT00.74BB02
294z2c_H_DA9_DA10NANNANT00.34BB01
304z2c_H_DA10_DC11NANNANT00.69BB13
314z2c_G_DG9_DT10B-ABA05820.18BA05
324z2c_G_DT10_DT11AAAAA02850.36AA02
334z2c_G_DT11_DG12NANNANT00.65AB03
344z2c_G_DG12_DT13BB2BB08520.40BB08
354z2c_G_DT13_DA14NANNANT00.40BA10
364z2c_G_DA14_DT15A-BAB05850.26AB05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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