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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Structure of Bsg25A binding with DNA

Results of the assignment of 48 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
014x0g_E_DG1_DT2B-ABA01280.23BA01
024x0g_E_DT2_DT3BBBBB01220.26BB01
034x0g_E_DT3_DC4BBBBB01550.16BB01
044x0g_E_DC4_DC5BBBBB01740.14BB01
054x0g_E_DC5_DA6BBBBB00480.53BB00
064x0g_E_DA6_DA7NANNANT00.29BA17
074x0g_E_DA7_DT8B-ABA01570.20BA01
084x0g_E_DT8_DT9AAAAA02870.46AA02
094x0g_E_DT9_DG10A-BAB03700.40AB03
104x0g_E_DG10_DG11BBBBB01140.42BB01
114x0g_E_DG11_DA12BBBBB00600.23BB00
124x0g_E_DA12_DA13BBBBB00750.19BB00
134x0g_F_DG1_DT2BBwBB02230.35BB02
144x0g_F_DT2_DT3B-ABA05670.32BA05
154x0g_F_DT3_DC4BBBBB01470.19BB01
164x0g_F_DC4_DC5BBBBB01630.15BB01
174x0g_F_DC5_DA6BBBBB00710.37BB00
184x0g_F_DA6_DA7BB2BB07720.24BB07
194x0g_F_DA7_DT8B-ABA01160.33BA01
204x0g_F_DT8_DT9AAAAA02580.46AA02
214x0g_F_DT9_DG10A-BAB01340.29AB01
224x0g_F_DG10_DG11B12BB04660.26BB04
234x0g_F_DG11_DA12miBBB10700.30BB10
244x0g_F_DA12_DA13BBBBB00710.25BB00
254x0g_G_DG1_DT2BBBBB01210.30BB01
264x0g_G_DT2_DT3BBBBB01250.29BB01
274x0g_G_DT3_DC4BBBBB01480.20BB01
284x0g_G_DC4_DC5BBBBB01540.18BB01
294x0g_G_DC5_DA6BBBBB00730.36BB00
304x0g_G_DA6_DA7BB2BB07690.23BB07
314x0g_G_DA7_DT8B-ABA05100.24BA05
324x0g_G_DT8_DT9AAAAA02550.47AA02
334x0g_G_DT9_DG10A-BAB03480.51AB03
344x0g_G_DG10_DG11BBBBB01120.47BB01
354x0g_G_DG11_DA12BBBBB01360.26BB01
364x0g_G_DA12_DA13BBBBB00480.30BB00
374x0g_H_DG1_DT2B-ABA05750.32BA05
384x0g_H_DT2_DT3BBBBB01240.29BB01
394x0g_H_DT3_DC4BBBBB01450.15BB01
404x0g_H_DC4_DC5BBBBB01810.12BB01
414x0g_H_DC5_DA6BBBBB00510.51BB00
424x0g_H_DA6_DA7BB2BB07380.26BB07
434x0g_H_DA7_DT8B-ABA01600.21BA01
444x0g_H_DT8_DT9AAAAA02850.44AA02
454x0g_H_DT9_DG10A-BAB01630.22AB01
464x0g_H_DG10_DG11B12BB04600.26BB04
474x0g_H_DG11_DA12B12BB04560.24BB04
484x0g_H_DA12_DA13BBBBB00780.22BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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