Conformers:
ABBIImiBZICOPNSYNN
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Crystal structure of RecQ catalytic core from C. sakazakii bound to DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 27 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4tmu_B_DG3_DT4 | NAN | NANT | 0 | 0.61 |
| 02 | 4tmu_B_DT4_DA5 | BBB | BB00 | 46 | 0.20 |
| 03 | 4tmu_B_DA5_DG6 | B12 | BB04 | 28 | 0.23 |
| 04 | 4tmu_B_DG6_DA7 | BBB | BB00 | 79 | 0.29 |
| 05 | 4tmu_B_DA7_DA8 | BBB | BB00 | 74 | 0.21 |
| 06 | 4tmu_B_DA8_DT9 | BBB | BB00 | 85 | 0.23 |
| 07 | 4tmu_B_DT9_DT10 | B-A | BA10 | 73 | 0.36 |
| 08 | 4tmu_B_DT10_DG11 | NAN | NANT | 0 | 0.75 |
| 09 | 4tmu_B_DA14_DA15 | NAN | NANT | 0 | 0.48 |
| 10 | 4tmu_B_DA15_DA16 | NAN | NANT | 0 | 0.58 |
| 11 | 4tmu_B_DA16_DT17 | NAN | NANT | 0 | 0.50 |
| 12 | 4tmu_B_DT17_DT18 | NAN | NANT | 0 | 0.54 |
| 13 | 4tmu_B_DT18_DC19 | NAN | NANT | 0 | 0.80 |
| 14 | 4tmu_B_DC19_DT20 | NAN | NANT | 0 | 0.48 |
| 15 | 4tmu_B_DT20_DA21 | NAN | NANT | 0 | 0.36 |
| 16 | 4tmu_B_DA21_DC22 | NAN | NANT | 0 | 0.92 |
| 17 | 4tmu_B_DC22_DC23 | NAN | NANT | 0 | 2.26 |
| 18 | 4tmu_B_DC23_DG24 | NAN | NANT | 0 | 1.76 |
| 19 | 4tmu_B_DG24_DG25 | NAN | NANT | 0 | 0.35 |
| 20 | 4tmu_B_DG25_DT26 | NAN | NANT | 0 | 0.58 |
| 21 | 4tmu_B_DT26_DG27 | ICL | IC01 | 41 | 0.71 |
| 22 | 4tmu_B_DG27_DC28 | B-A | BA13 | 14 | 0.27 |
| 23 | 4tmu_B_DC28_DC29 | AAA | AA00 | 49 | 0.49 |
| 24 | 4tmu_B_DC29_DT30 | NAN | NANT | 0 | 0.68 |
| 25 | 4tmu_B_DT30_DT31 | NAN | NANT | 0 | 1.03 |
| 26 | 4tmu_B_DT31_DA32 | NAN | NANT | 0 | 1.18 |
| 27 | 4tmu_B_DA32_DC33 | NAN | NANT | 0 | 1.67 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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