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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structure of a distal-less homeobox protein 5 (Dlx5) from Homo sapiens at 1.85 A resolution

Results of the assignment of 51 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
014rdu_B_DC1_DG2NANNANT00.52AB03
024rdu_B_DG2_DA3B-ABA08900.29BA08
034rdu_B_DA3_DC4AAAAA00770.29AA00
044rdu_B_DC4_DT5AAAAA00590.24AA00
054rdu_B_DT5_DA6A-BAB01730.18AB01
064rdu_B_DA6_DA7BBBBB01700.22BB01
074rdu_B_DA7_DT8B-ABA05880.27BA05
084rdu_B_DT8_DT9A-BAB03680.29AB03
094rdu_B_DT9_DA10BBBBB00740.22BB00
104rdu_B_DA10_DG11B12BB04780.25BB04
114rdu_B_DG11_DT12BBBBB00620.30BB00
124rdu_B_DT12_DC13BBBBB00740.19BB00
134rdu_B_DC13_DG14BB2BB07850.19BB07
144rdu_C_DC1_DG2BBBBB0070.40BB00
154rdu_C_DG2_DA3B12BB04780.25BB04
164rdu_C_DA3_DC4B-ABA05810.21BA05
174rdu_C_DC4_DT5BBBBB00230.26BB00
184rdu_C_DT5_DA6BB2BB07840.28BB07
194rdu_C_DA6_DA7BBBBB00900.11BB00
204rdu_C_DA7_DT8BBBBB01590.21BB01
214rdu_C_DT8_DT9BBBBB00760.21BB00
224rdu_C_DT9_DA10BBBBB00750.25BB00
234rdu_C_DA10_DG11B-ABA13820.22BA13
244rdu_C_DG11_DT12A-BAB05660.21AB05
254rdu_C_DT12_DC13BBBBB00800.21BB00
264rdu_C_DC13_DG14NANNANT01.11IC06
274rdu_E_DC1_DG2NANNANT00.69AB02
284rdu_E_DG2_DA3B12BB04880.15BB04
294rdu_E_DA3_DC4B-ABA10690.24BA10
304rdu_E_DC4_DT5A-BAB01150.30AB01
314rdu_E_DT5_DA6A-BAB03190.26AB03
324rdu_E_DA6_DA7BBBBB00440.25BB00
334rdu_E_DA7_DT8BBBBB01910.18BB01
344rdu_E_DT8_DT9BBBBB00590.22BB00
354rdu_E_DT9_DA10BBBBB00780.23BB00
364rdu_E_DA10_DG11B12BB04660.30BB04
374rdu_E_DG11_DT12BBBBB00560.29BB00
384rdu_E_DT12_DC13BBBBB00820.24BB00
394rdu_E_DC13_DG14BB2BB07750.24BB07
404rdu_F_DC1_DG2BBBBB00470.55BB00
414rdu_F_DG2_DA3BB2BB07610.32BB07
424rdu_F_DA3_DC4B-ABA05880.26BA05
434rdu_F_DC4_DT5BBBBB00270.27BB00
444rdu_F_DT5_DA6BB2BB07830.24BB07
454rdu_F_DA6_DA7BBBBB01810.15BB01
464rdu_F_DA7_DT8BBBBB01700.19BB01
474rdu_F_DT8_DT9BBBBB00910.14BB00
484rdu_F_DT9_DA10BBBBB00670.19BB00
494rdu_F_DA10_DG11BBBBB00730.26BB00
504rdu_F_DG11_DT12BBBBB00830.32BB00
514rdu_F_DT12_DC13BBBBB01190.26BB01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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