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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structure of Magnetospirillum gryphiswaldense MSR-1 Fur-Mn2+-feoAB1 operator

Results of the assignment of 48 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
014rb3_A_DT1_DT2BBBBB00640.39BB00
024rb3_A_DT2_DA3BB2BB07620.23BB07
034rb3_A_DA3_DA4B12BB04780.13BB04
044rb3_A_DA4_DT5BBBBB00850.19BB00
054rb3_A_DT5_DT6BBBBB00690.17BB00
064rb3_A_DT6_DG7BBBBB00570.28BB00
074rb3_A_DG7_DC8B-ABA01470.17BA01
084rb3_A_DC8_DA9NANNANT00.59BA05
094rb3_A_DA9_DA10A-BAB03630.18AB03
104rb3_A_DA10_DA11BBBBB00190.25BB00
114rb3_A_DA11_DT12NANNANT00.44BB05
124rb3_A_DT12_DC13BBwBB02410.52BB02
134rb3_A_DC13_DA14BBBBB00110.35BB00
144rb3_A_DA14_DT15BBBBB01710.17BB01
154rb3_A_DT15_DT16BBBBB01550.25BB01
164rb3_A_DT16_DT17miBBB15670.26BB15
174rb3_A_DT17_DG18B12BB04790.19BB04
184rb3_A_DG18_DC19BBBBB00780.18BB00
194rb3_A_DC19_DA20miBBB10760.42BB10
204rb3_A_DA20_DA21BBBBB00440.26BB00
214rb3_A_DA21_DT22miBBB15700.23BB15
224rb3_A_DT22_DT23BBBBB00540.19BB00
234rb3_A_DT23_DG24BB2BB07280.30BB07
244rb3_A_DG24_DC25BBBBB00410.48BB00
254rb3_B_DG1_DC2NANNANT00.54BB02
264rb3_B_DC2_DA3NANNANT00.64BB10
274rb3_B_DA3_DA4BBBBB00670.26BB00
284rb3_B_DA4_DT5BBBBB01810.20BB01
294rb3_B_DT5_DT6BBBBB01630.22BB01
304rb3_B_DT6_DG7BBBBB00200.39BB00
314rb3_B_DG7_DC8B-ABA16150.41BA16
324rb3_B_DC8_DA9NANNANT00.78BB02
334rb3_B_DA9_DA10NANNANT00.46BB10
344rb3_B_DA10_DA11NANNANT00.45BB11
354rb3_B_DA11_DT12NANNANT00.52BA10
364rb3_B_DT12_DG13NANNANT00.60AB05
374rb3_B_DG13_DA14BBBBB00570.23BB00
384rb3_B_DA14_DT15B-ABA05510.33BA05
394rb3_B_DT15_DT16AAAAA02200.57AA02
404rb3_B_DT16_DT17A-BAB02860.24AB02
414rb3_B_DT17_DG18NANNANT00.36BB04
424rb3_B_DG18_DC19miBBB15610.22BB15
434rb3_B_DC19_DA20B12BB04870.18BB04
444rb3_B_DA20_DA21BBBBB00690.21BB00
454rb3_B_DA21_DT22BBBBB00830.22BB00
464rb3_B_DT22_DT23BBBBB00840.19BB00
474rb3_B_DT23_DA24B12BB04530.37BB04
484rb3_B_DA24_DA25BBBBB00660.30BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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