DNATCO v3.2: results

Crystal structure of Magnetospirillum gryphiswaldense MSR-1 Fur-Mn2+-feoAB1 operator

Results of the assignment of 48 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.

step number	Step name	CANA	NtC	confal	rmsd
01	4rb3_A_DT1_DT2	BBB	BB00	64	0.39	BB00
02	4rb3_A_DT2_DA3	BB2	BB07	62	0.23	BB07
03	4rb3_A_DA3_DA4	B12	BB04	78	0.13	BB04
04	4rb3_A_DA4_DT5	BBB	BB00	85	0.19	BB00
05	4rb3_A_DT5_DT6	BBB	BB00	69	0.17	BB00
06	4rb3_A_DT6_DG7	BBB	BB00	57	0.28	BB00
07	4rb3_A_DG7_DC8	B-A	BA01	47	0.17	BA01
08	4rb3_A_DC8_DA9	NAN	NANT	0	0.59	BA05
09	4rb3_A_DA9_DA10	A-B	AB03	63	0.18	AB03
10	4rb3_A_DA10_DA11	BBB	BB00	19	0.25	BB00
11	4rb3_A_DA11_DT12	NAN	NANT	0	0.44	BB05
12	4rb3_A_DT12_DC13	BBw	BB02	41	0.52	BB02
13	4rb3_A_DC13_DA14	BBB	BB00	11	0.35	BB00
14	4rb3_A_DA14_DT15	BBB	BB01	71	0.17	BB01
15	4rb3_A_DT15_DT16	BBB	BB01	55	0.25	BB01
16	4rb3_A_DT16_DT17	miB	BB15	67	0.26	BB15
17	4rb3_A_DT17_DG18	B12	BB04	79	0.19	BB04
18	4rb3_A_DG18_DC19	BBB	BB00	78	0.18	BB00
19	4rb3_A_DC19_DA20	miB	BB10	76	0.42	BB10
20	4rb3_A_DA20_DA21	BBB	BB00	44	0.26	BB00
21	4rb3_A_DA21_DT22	miB	BB15	70	0.23	BB15
22	4rb3_A_DT22_DT23	BBB	BB00	54	0.19	BB00
23	4rb3_A_DT23_DG24	BB2	BB07	28	0.30	BB07
24	4rb3_A_DG24_DC25	BBB	BB00	41	0.48	BB00
25	4rb3_B_DG1_DC2	NAN	NANT	0	0.54	BB02
26	4rb3_B_DC2_DA3	NAN	NANT	0	0.64	BB10
27	4rb3_B_DA3_DA4	BBB	BB00	67	0.26	BB00
28	4rb3_B_DA4_DT5	BBB	BB01	81	0.20	BB01
29	4rb3_B_DT5_DT6	BBB	BB01	63	0.22	BB01
30	4rb3_B_DT6_DG7	BBB	BB00	20	0.39	BB00
31	4rb3_B_DG7_DC8	B-A	BA16	15	0.41	BA16
32	4rb3_B_DC8_DA9	NAN	NANT	0	0.78	BB02
33	4rb3_B_DA9_DA10	NAN	NANT	0	0.46	BB10
34	4rb3_B_DA10_DA11	NAN	NANT	0	0.45	BB11
35	4rb3_B_DA11_DT12	NAN	NANT	0	0.52	BA10
36	4rb3_B_DT12_DG13	NAN	NANT	0	0.60	AB05
37	4rb3_B_DG13_DA14	BBB	BB00	57	0.23	BB00
38	4rb3_B_DA14_DT15	B-A	BA05	51	0.33	BA05
39	4rb3_B_DT15_DT16	AAA	AA02	20	0.57	AA02
40	4rb3_B_DT16_DT17	A-B	AB02	86	0.24	AB02
41	4rb3_B_DT17_DG18	NAN	NANT	0	0.36	BB04
42	4rb3_B_DG18_DC19	miB	BB15	61	0.22	BB15
43	4rb3_B_DC19_DA20	B12	BB04	87	0.18	BB04
44	4rb3_B_DA20_DA21	BBB	BB00	69	0.21	BB00
45	4rb3_B_DA21_DT22	BBB	BB00	83	0.22	BB00
46	4rb3_B_DT22_DT23	BBB	BB00	84	0.19	BB00
47	4rb3_B_DT23_DA24	B12	BB04	53	0.37	BB04
48	4rb3_B_DA24_DA25	BBB	BB00	66	0.30	BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

δ1

ε1

ζ1

α2

β2

γ2

δ2

χ1

χ2

μ

NN

CC

step_torsions

ntC_average

Δ torsions

torsion scores

comments step confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

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Color by conformation group (pyramids)

Color by conformation group (pyramids)

group
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Color by NtC (balls)

Color by NtC (balls)

A

A-B

B-A

IC

OPN

Z

N

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