Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Egr1/Zif268 zinc fingers in complex with formylated DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 31 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4r2d_B_DA1_DG.A2 | SYN | BBS1 | 35 | 0.39 |
| 02 | 4r2d_B_DA1_DG.B2 | SYN | BBS1 | 36 | 0.38 |
| 03 | 4r2d_B_DG.A2_DC.A3 | BBB | BB00 | 86 | 0.20 |
| 04 | 4r2d_B_DG.B2_DC.B3 | BBB | BB00 | 85 | 0.20 |
| 05 | 4r2d_B_DC.A3_DG4 | B12 | BB04 | 48 | 0.32 |
| 06 | 4r2d_B_DC.B3_DG4 | B12 | BB04 | 47 | 0.33 |
| 07 | 4r2d_B_DG4_DT5 | BBB | BB00 | 52 | 0.40 |
| 08 | 4r2d_B_DT5_DG.A6 | B12 | BB04 | 55 | 0.30 |
| 09 | 4r2d_B_DT5_DG.B6 | B12 | BB04 | 56 | 0.30 |
| 10 | 4r2d_B_DG.A6_DG.A7 | BBB | BB00 | 67 | 0.17 |
| 11 | 4r2d_B_DG.B6_DG.B7 | BBB | BB00 | 62 | 0.18 |
| 12 | 4r2d_B_DG.A7_DG.A8 | BBw | BB17 | 43 | 0.24 |
| 13 | 4r2d_B_DG.B7_DG.B8 | BBB | BB00 | 67 | 0.30 |
| 14 | 4r2d_B_DG.A8_5FC9 | miB | BB12 | 64 | 0.29 |
| 15 | 4r2d_B_DG.B8_5FC9 | miB | BB12 | 62 | 0.32 |
| 16 | 4r2d_B_5FC9_DG10 | BBw | BB16 | 46 | 0.39 |
| 17 | 4r2d_B_DG10_DT11 | BBB | BB01 | 90 | 0.18 |
| 18 | 4r2d_C_DT1_DA2 | A-B | AB05 | 87 | 0.19 |
| 19 | 4r2d_C_DA2_5FC3 | BBB | BB00 | 70 | 0.20 |
| 20 | 4r2d_C_5FC3_DG4 | BBB | BB00 | 80 | 0.18 |
| 21 | 4r2d_C_DG4_DC.A5 | B-A | BA16 | 80 | 0.20 |
| 22 | 4r2d_C_DG4_DC.B5 | B-A | BA16 | 29 | 0.38 |
| 23 | 4r2d_C_DC.A5_DC.A6 | A-B | AB05 | 80 | 0.19 |
| 24 | 4r2d_C_DC.B5_DC.B6 | NAN | NANT | 0 | 0.38 |
| 25 | 4r2d_C_DC.A6_DC.A7 | B-A | BA05 | 39 | 0.29 |
| 26 | 4r2d_C_DC.B6_DC.B7 | B-A | BA05 | 67 | 0.27 |
| 27 | 4r2d_C_DC.A7_DA8 | NAN | NANT | 0 | 0.47 |
| 28 | 4r2d_C_DC.B7_DA8 | AAw | AA01 | 26 | 0.41 |
| 29 | 4r2d_C_DA8_DC9 | A-B | AB03 | 27 | 0.41 |
| 30 | 4r2d_C_DC9_DG10 | B-A | BA05 | 64 | 0.18 |
| 31 | 4r2d_C_DG10_DC11 | BBB | BB01 | 26 | 0.32 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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