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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

he catalytic core of Rad2 in complex with DNA substrate (complex II)

Results of the assignment of 28 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
014q0w_C_DT1_DG2A-BAB01380.13AB01
024q0w_C_DG2_DA3BBBBB00870.19BB00
034q0w_C_DA3_DT4BBBBB01980.13BB01
044q0w_C_DT4_DC5BBBBB00680.18BB00
054q0w_C_DC5_DC6BBBBB00880.18BB00
064q0w_C_DC6_DG7B12BB04720.19BB04
074q0w_C_DG7_DT8BBBBB01910.18BB01
084q0w_C_DT8_DC9BBBBB01390.15BB01
094q0w_C_DC9_DC10BBBBB00840.22BB00
104q0w_C_DC10_DA11BBBBB00680.28BB00
114q0w_C_DA11_DC12B12BB04940.11BB04
124q0w_C_DC12_DC13BBBBB00900.13BB00
134q0w_C_DC13_DT14BBBBB00910.13BB00
144q0w_C_DT14_DT15B-ABA01120.37BA01
154q0w_D_DT1_DA2NANNANT00.39BB10
164q0w_D_DA2_DG3BB2BB07570.29BB07
174q0w_D_DG3_DG4BBBBB00920.13BB00
184q0w_D_DG4_DT5BBBBB00940.11BB00
194q0w_D_DT5_DG6BBBBB00680.36BB00
204q0w_D_DG6_DG7BBBBB01800.19BB01
214q0w_D_DG7_DA8BBBBB01630.25BB01
224q0w_D_DA8_DC9BBBBB01940.12BB01
234q0w_D_DC9_DG10BBBBB00770.22BB00
244q0w_D_DG10_DG11B12BB04940.17BB04
254q0w_D_DG11_DA12BBBBB00970.14BB00
264q0w_D_DA12_DT13BBBBB00640.20BB00
274q0w_D_DT13_DC14BBBBB00780.21BB00
284q0w_D_DC14_DA15BBBBB01100.52BB01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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