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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structure of human polymerase eta extending an 8-oxog dna lesion: post insertion of 8-oxog-dc pair

Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
014o3s_T_DA2_DT3NANNANT02.23OP19
024o3s_T_DT3_DG4BBBBB00350.43BB00
034o3s_T_DG4_8OG5BBBBB00760.18BB00
044o3s_T_8OG5_DT6B-ABA09460.26BA09
054o3s_T_DT6_DG7NANNANT00.60AA00
064o3s_T_DG7_DA8A-BAB01460.32AB01
074o3s_T_DA8_DC9BBBBB00850.15BB00
084o3s_T_DC9_DG10B12BB04560.24BB04
094o3s_T_DG10_DC11BBBBB00890.16BB00
104o3s_T_DC11_DT12BBBBB00910.21BB00
114o3s_P_DA1_DG2BBBBB00380.38BB00
124o3s_P_DG2_DC3BBBBB00750.23BB00
134o3s_P_DC3_DG4BBBBB00800.15BB00
144o3s_P_DG4_DT5BBBBB00760.25BB00
154o3s_P_DT5_DC6B-ABA05900.09BA05
164o3s_P_DC6_DA7B-ABA05460.29BA05
174o3s_P_DA7_DC.A8A-BAB01570.29AB01
184o3s_P_DA7_DC.B8A-BAB02320.42AB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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