Click the Summary/Torsions/Similar/... tabs for more details.
Center view on step or molecule.
Show reference and contacts model altloc

Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structure of a polypeptide p53 mutant bound to DNA

Results of the assignment of 50 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
014mzr_K_DT3_DG4BB2BB07590.25BB07
024mzr_K_DG4_DA5B12BB04750.21BB04
034mzr_K_DA5_DG6NANNANT00.41BB08
044mzr_K_DG6_DA7BBBBB00550.34BB00
054mzr_K_DA7_DC8miBBB13860.22BB13
064mzr_K_DC8_DT9BBwBB16700.45BB16
074mzr_K_DT9_DT10BBBBB00780.38BB00
084mzr_K_DT10_DG11B12BB04780.27BB04
094mzr_K_DG11_DC12BBwBB02590.23BB02
104mzr_K_DC12_DC13B12BB04220.28BB04
114mzr_K_DC13_DC14BBBBB00530.46BB00
124mzr_K_DC14_DA15BB2BB07840.24BB07
134mzr_K_DA15_DG16B12BB04770.18BB04
144mzr_K_DG16_DA17miBBB12610.39BB12
154mzr_K_DA17_DC18BBBBB00110.50BB00
164mzr_K_DC18_DT19BBBBB00770.23BB00
174mzr_K_DT19_DT20BBBBB00530.48BB00
184mzr_K_DT20_DG21BB2BB07840.21BB07
194mzr_K_DG21_DC22BBwBB02710.20BB02
204mzr_K_DC22_DC23B12BB04690.21BB04
214mzr_K_DC23_DC24BBwBB02600.28BB02
224mzr_K_DC24_DG25B12BB04680.26BB04
234mzr_K_DG25_DT26BBBBB00780.20BB00
244mzr_K_DT26_DT27BBBBB00850.26BB00
254mzr_K_DT27_DT28BBBBB00810.21BB00
264mzr_L_DA27_DC28NANNANT00.69BB07
274mzr_L_DC28_DG29BBwBB11910.19BB11
284mzr_L_DG29_DG30BBBBB00440.28BB00
294mzr_L_DG30_DG31BBBBB00910.11BB00
304mzr_L_DG31_DC32BBwBB03460.40BB03
314mzr_L_DC32_DA33BBBBB00580.39BB00
324mzr_L_DA33_DA34NANNANT00.50BB02
334mzr_L_DA34_DG35BBBBB00740.34BB00
344mzr_L_DG35_DT36BBBBB00890.14BB00
354mzr_L_DT36_DC37B12BB04750.23BB04
364mzr_L_DC37_DT38BBBBB00660.21BB00
374mzr_L_DT38_DG39B12BB04520.36BB04
384mzr_L_DG39_DG40BB2BB07550.21BB07
394mzr_L_DG40_DG41BBBBB00930.12BB00
404mzr_L_DG41_DC42BBBBB00820.22BB00
414mzr_L_DC42_DA43BBBBB00740.23BB00
424mzr_L_DA43_DA44BBBBB00610.41BB00
434mzr_L_DA44_DG45B12BB04630.35BB04
444mzr_L_DG45_DT46BBBBB00890.21BB00
454mzr_L_DT46_DC47BBBBB00890.22BB00
464mzr_L_DC47_DT48BBBBB00860.18BB00
474mzr_L_DT48_DC49B12BB04750.27BB04
484mzr_L_DC49_DA50B12BB04440.23BB04
494mzr_L_DA50_DA51B12BB04790.26BB04
504mzr_L_DA51_DA52BBwBB11750.24BB11

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show



Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N