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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

TcaR-ssDNA complex crystal structure reveals the novel ssDNA binding mechanism of the MarR family proteins

Results of the assignment of 19 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
014kdp_H_DC1_DG2NANNANT01.94OP30
024kdp_H_DG2_DC3NANNANT01.10OP31
034kdp_H_DC3_DA4NANNANT01.28AA11
044kdp_H_DA4_DG5NANNANT00.69IC04
054kdp_H_DG5_DC6NANNANT00.93AA07
064kdp_H_DC6_DG7NANNANT01.51OP29
074kdp_H_DG7_DC8NANNANT01.09IC04
084kdp_H_DC8_DG9NANNANT01.76IC03
094kdp_H_DG9_DC10NANNANT01.38AA13
104kdp_H_DC10_DA11NANNANT01.71AB02
114kdp_J_DC1_DG2NANNANT01.20OP31
124kdp_J_DG2_DC3NANNANT00.71AA01
134kdp_J_DC3_DG4NANNANT01.21OP08
144kdp_J_DG4_DC5NANNANT00.88AA00
154kdp_J_DC5_DA6NANNANT01.39IC04
164kdp_J_DA6_DG7NANNANT00.99BB12
174kdp_J_DG7_DC8NANNANT01.48AA11
184kdp_J_DC8_DC9NANNANT01.56OP17
194kdp_J_DC9_DC10NANNANT01.16OP04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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