Results of the assignment of 27 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
| step number | Step name | CANA | NtC | confal | rmsd | |
|---|---|---|---|---|---|---|
| 01 | 4jv0_B_DT4_KAG5 | B-A | BA08 | 44 | 0.55 | BA08 |
| 02 | 4jv0_B_KAG5_DG6 | BBB | BB01 | 23 | 0.34 | BB01 |
| 03 | 4jv0_B_DG6_DA7 | BBB | BB00 | 30 | 0.40 | BB00 |
| 04 | 4jv0_B_DA7_DA8 | B-A | BA08 | 47 | 0.41 | BA08 |
| 05 | 4jv0_B_DA8_DT9 | BBB | BB01 | 45 | 0.23 | BB01 |
| 06 | 4jv0_B_DT9_DC10 | B-A | BA08 | 75 | 0.36 | BA08 |
| 07 | 4jv0_B_DC10_DC11 | A-B | AB03 | 84 | 0.38 | AB03 |
| 08 | 4jv0_B_DC11_DT12 | miB | BB10 | 78 | 0.25 | BB10 |
| 09 | 4jv0_B_DT12_DT13 | BBB | BB01 | 78 | 0.17 | BB01 |
| 10 | 4jv0_B_DT13_DC14 | B-A | BA05 | 52 | 0.25 | BA05 |
| 11 | 4jv0_B_DC14_DC15 | B-A | BA05 | 9 | 0.28 | BA05 |
| 12 | 4jv0_B_DC15_DC16 | A-B | AB01 | 14 | 0.38 | AB01 |
| 13 | 4jv0_B_DC16_DC17 | BBB | BB00 | 40 | 0.31 | BB00 |
| 14 | 4jv0_B_DC17_DC18 | NAN | NANT | 0 | 0.51 | BB04 |
| 15 | 4jv0_C_DG19_DG20 | A-B | AB03 | 32 | 0.34 | AB03 |
| 16 | 4jv0_C_DG20_DG21 | miB | BB15 | 41 | 0.42 | BB15 |
| 17 | 4jv0_C_DG21_DG22 | BBB | BB00 | 29 | 0.25 | BB00 |
| 18 | 4jv0_C_DG22_DG23 | NAN | NANT | 0 | 0.29 | BB05 |
| 19 | 4jv0_C_DG23_DA24 | NAN | NANT | 0 | 0.46 | BB16 |
| 20 | 4jv0_C_DA24_DA25 | BBB | BB00 | 49 | 0.25 | BB00 |
| 21 | 4jv0_C_DA25_DG26 | B12 | BB04 | 65 | 0.31 | BB04 |
| 22 | 4jv0_C_DG26_DG27 | B12 | BB04 | 11 | 0.35 | BB04 |
| 23 | 4jv0_C_DG27_DA28 | BBB | BB00 | 41 | 0.22 | BB00 |
| 24 | 4jv0_C_DA28_DT29 | BBB | BB01 | 35 | 0.26 | BB01 |
| 25 | 4jv0_C_DT29_DT30 | BBB | BB01 | 41 | 0.23 | BB01 |
| 26 | 4jv0_C_DT30_DC31 | BBB | BB01 | 63 | 0.26 | BB01 |
| 27 | 4jv0_C_DC31_DC32 | BBB | BB00 | 23 | 0.32 | BB00 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Download
Results as csv or json file.Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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