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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

The Structure of FixK2 from Bradyrhizobium japonicum

Results of the assignment of 47 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
014i2o_W_DG3_DG4BBBBB00890.23BB00
024i2o_W_DG4_DG5B12BB04170.49BB04
034i2o_W_DG5_DA6BBBBB00630.18BB00
044i2o_W_DA6_DA7BBBBB01940.14BB01
054i2o_W_DA7_DT8BBBBB01840.22BB01
064i2o_W_DT8_DT9B-ABA05820.16BA05
074i2o_W_DT9_DG10BBBBB01600.25BB01
084i2o_W_DG10_DA11BBBBB00870.19BB00
094i2o_W_DA11_DT12B-ABA05940.21BA05
104i2o_W_DT12_DT13BBBBB01340.33BB01
114i2o_W_DT13_DG14BBBBB00760.18BB00
124i2o_W_DG14_DA15B12BB04810.28BB04
134i2o_W_DA15_DA16BBBBB01530.32BB01
144i2o_W_DA16_DA17BBBBB00650.33BB00
154i2o_W_DA17_DT18B-ABA05770.29BA05
164i2o_W_DT18_DC19BBBBB00650.20BB00
174i2o_W_DC19_DA20BBBBB00810.23BB00
184i2o_W_DA20_DA21NANNANT00.58BB02
194i2o_W_DA21_DG22BBwBB03580.33BB03
204i2o_W_DG22_DA23BBBBB00650.28BB00
214i2o_W_DA23_DT24BBBBB00670.26BB00
224i2o_W_DT24_DA25BBBBB00570.29BB00
234i2o_W_DA25_DG26NANNANT00.37BB08
244i2o_W_DG26_DG27NANNANT00.47BB02
254i2o_X_DC3_DT4BBBBB00770.33BB00
264i2o_X_DT4_DA5NANNANT00.79AB1S
274i2o_X_DA5_DT6SYNBBS1440.41BBS1
284i2o_X_DT6_DC7BBBBB01790.20BB01
294i2o_X_DC7_DT8BBBBB01830.21BB01
304i2o_X_DT8_DT9B-ABA05800.17BA05
314i2o_X_DT9_DG10BBBBB01340.25BB01
324i2o_X_DG10_DA11BBBBB00900.20BB00
334i2o_X_DA11_DT12B-ABA05920.22BA05
344i2o_X_DT12_DT13BBBBB01300.34BB01
354i2o_X_DT13_DT14BBBBB00830.22BB00
364i2o_X_DT14_DC15B12BB04570.31BB04
374i2o_X_DC15_DA16BBBBB00710.30BB00
384i2o_X_DA16_DA17BBBBB00770.33BB00
394i2o_X_DA17_DT18B-ABA05790.29BA05
404i2o_X_DT18_DC19BBBBB00690.19BB00
414i2o_X_DC19_DA20BBBBB00880.26BB00
424i2o_X_DA20_DA21NANNANT00.63BB02
434i2o_X_DA21_DT22NANNANT00.70BB12
444i2o_X_DT22_DT23BBBBB00380.40BB00
454i2o_X_DT23_DC24BBBBB00910.19BB00
464i2o_X_DC24_DC25NANNANT00.55BB02
474i2o_X_DC25_DC26NANNANT00.61AB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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