Conformers:
ABBIImiBZICOPNSYNN
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Y-family DNA polymerase chimera Dbh-Dpo4-Dpo4 #1
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 52 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4f4w_P_DG1_DG2 | BBB | BB00 | 63 | 0.46 |
| 02 | 4f4w_P_DG2_DC3 | BB2 | BB07 | 65 | 0.31 |
| 03 | 4f4w_P_DC3_DA4 | BBB | BB00 | 92 | 0.18 |
| 04 | 4f4w_P_DA4_DC5 | B-A | BA05 | 94 | 0.18 |
| 05 | 4f4w_P_DC5_DT6 | B-A | BA05 | 45 | 0.35 |
| 06 | 4f4w_P_DT6_DG7 | A-B | AB01 | 76 | 0.15 |
| 07 | 4f4w_P_DG7_DA8 | BBB | BB01 | 50 | 0.21 |
| 08 | 4f4w_P_DA8_DT9 | BBB | BB01 | 54 | 0.39 |
| 09 | 4f4w_P_DT9_DC10 | NAN | NANT | 0 | 0.31 |
| 10 | 4f4w_P_DC10_DG11 | A-B | AB02 | 62 | 0.35 |
| 11 | 4f4w_P_DG11_DG12 | BB2 | BB07 | 60 | 0.39 |
| 12 | 4f4w_P_DG12_DC13 | B-A | BA01 | 28 | 0.19 |
| 13 | 4f4w_T_DC4_DG5 | NAN | NANT | 0 | 1.13 |
| 14 | 4f4w_T_DG5_DG6 | BBB | BB00 | 72 | 0.32 |
| 15 | 4f4w_T_DG6_DC7 | B-A | BA09 | 77 | 0.17 |
| 16 | 4f4w_T_DC7_DC8 | AAA | AA08 | 39 | 0.22 |
| 17 | 4f4w_T_DC8_DG9 | A-B | AB01 | 79 | 0.17 |
| 18 | 4f4w_T_DG9_DA10 | BBB | BB00 | 85 | 0.21 |
| 19 | 4f4w_T_DA10_DT11 | B-A | BA05 | 90 | 0.23 |
| 20 | 4f4w_T_DT11_DC12 | BBB | BB00 | 18 | 0.29 |
| 21 | 4f4w_T_DC12_DA13 | BB2 | BB07 | 87 | 0.20 |
| 22 | 4f4w_T_DA13_DG14 | BBB | BB00 | 62 | 0.19 |
| 23 | 4f4w_T_DG14_DT15 | BBB | BB01 | 74 | 0.19 |
| 24 | 4f4w_T_DT15_DG16 | BBB | BB01 | 72 | 0.23 |
| 25 | 4f4w_T_DG16_DC17 | B-A | BA05 | 72 | 0.28 |
| 26 | 4f4w_T_DC17_DC18 | AAA | AA02 | 70 | 0.39 |
| 27 | 4f4w_E_DG1_DG2 | BBB | BB00 | 55 | 0.42 |
| 28 | 4f4w_E_DG2_DC3 | BB2 | BB07 | 51 | 0.31 |
| 29 | 4f4w_E_DC3_DA4 | BBB | BB00 | 73 | 0.24 |
| 30 | 4f4w_E_DA4_DC5 | B-A | BA05 | 97 | 0.18 |
| 31 | 4f4w_E_DC5_DT6 | B-A | BA05 | 48 | 0.34 |
| 32 | 4f4w_E_DT6_DG7 | A-B | AB01 | 81 | 0.14 |
| 33 | 4f4w_E_DG7_DA8 | BBB | BB01 | 59 | 0.21 |
| 34 | 4f4w_E_DA8_DT9 | BBB | BB01 | 53 | 0.37 |
| 35 | 4f4w_E_DT9_DC10 | BBB | BB00 | 82 | 0.14 |
| 36 | 4f4w_E_DC10_DG11 | BBB | BB00 | 76 | 0.32 |
| 37 | 4f4w_E_DG11_DG12 | BB2 | BB07 | 62 | 0.35 |
| 38 | 4f4w_E_DG12_DC13 | B-A | BA01 | 33 | 0.23 |
| 39 | 4f4w_F_DC4_DG5 | NAN | NANT | 0 | 1.11 |
| 40 | 4f4w_F_DG5_DG6 | BBB | BB00 | 72 | 0.33 |
| 41 | 4f4w_F_DG6_DC7 | B-A | BA09 | 70 | 0.19 |
| 42 | 4f4w_F_DC7_DC8 | AAA | AA08 | 25 | 0.23 |
| 43 | 4f4w_F_DC8_DG9 | A-B | AB01 | 66 | 0.17 |
| 44 | 4f4w_F_DG9_DA10 | BBB | BB00 | 81 | 0.20 |
| 45 | 4f4w_F_DA10_DT11 | BBB | BB01 | 78 | 0.22 |
| 46 | 4f4w_F_DT11_DC12 | BBB | BB00 | 18 | 0.29 |
| 47 | 4f4w_F_DC12_DA13 | BB2 | BB07 | 87 | 0.16 |
| 48 | 4f4w_F_DA13_DG14 | BBB | BB00 | 80 | 0.16 |
| 49 | 4f4w_F_DG14_DT15 | BBB | BB01 | 70 | 0.17 |
| 50 | 4f4w_F_DT15_DG16 | BBB | BB01 | 66 | 0.23 |
| 51 | 4f4w_F_DG16_DC17 | B-A | BA05 | 59 | 0.30 |
| 52 | 4f4w_F_DC17_DC18 | AAA | AA02 | 74 | 0.40 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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