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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Human DNA polymerase eta - DNA ternary complex: Reaction in the AT crystal at pH 6.7 for 15 hr, Sideway translocation

Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
014ed6_T_DA2_DT3NANNANT01.03OP21
024ed6_T_DT3_DT4NANNANT00.91OP22
034ed6_T_DT4_DA5BBBBB00170.47BB00
044ed6_T_DA5_DT6B-ABA09890.22BA09
054ed6_T_DT6_DG7AAAAA08530.40AA08
064ed6_T_DG7_DA8NANNANT00.51AB04
074ed6_T_DA8_DC9B-ABA05600.22BA05
084ed6_T_DC9_DG10A-BAB01410.28AB01
094ed6_T_DG10_DC11BBBBB00770.23BB00
104ed6_T_DC11_DT12BBBBB00880.24BB00
114ed6_P_DA1_DG2BBBBB00470.35BB00
124ed6_P_DG2_DC3B-ABA05280.31BA05
134ed6_P_DC3_DG4BBBBB01450.21BB01
144ed6_P_DG4_DT5BBBBB00670.28BB00
154ed6_P_DT5_DC6BBBBB01720.20BB01
164ed6_P_DC6_DA7B-ABA05590.22BA05
174ed6_P_DA7_DT8NANNANT00.48AA01
184ed6_P_DT8_DA9NANNANT00.92BA10

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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