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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Human DNA polymerase eta - DNA ternary complex: AT crystal at pH 6.8 (Na+ MES) with 1 Ca2+ ion

Results of the assignment of 21 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
014ed0_T_DA2_DT3NANNANT01.20OP18
024ed0_T_DT3_DT4BBBBB00650.29BB00
034ed0_T_DT4_DA5BBBBB00890.15BB00
044ed0_T_DA5_DT6B-ABA09850.28BA09
054ed0_T_DT6_DG7A-BAB04240.50AB04
064ed0_T_DG7_DA8BBBBB00210.45BB00
074ed0_T_DA8_DC9BBBBB00880.14BB00
084ed0_T_DC9_DG10BBBBB00600.34BB00
094ed0_T_DG10_DC11BBBBB00830.20BB00
104ed0_T_DC11_DT12BBBBB00840.23BB00
114ed0_P_DA.A1_DG.A2BBBBB00190.46BB00
124ed0_P_DA.B1_DG.B2BBBBB00440.31BB00
134ed0_P_DG.A2_DC3BBBBB01870.21BB01
144ed0_P_DG.B2_DC3BBBBB01910.13BB01
154ed0_P_DC3_DG4BBBBB01830.16BB01
164ed0_P_DG4_DT5BBBBB00610.22BB00
174ed0_P_DT5_DC6B-ABA05890.09BA05
184ed0_P_DC6_DA.A7B-ABA05450.30BA05
194ed0_P_DC6_DA.B7AAAAA02120.61AA02
204ed0_P_DA.A7_DT.A8A-BAB01590.32AB01
214ed0_P_DA.B7_DT.B8A-BAB02300.32AB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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