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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Human DNA polymerase eta - DNA ternary complex: Reaction in the AT crystal at pH 7.0 for 250 sec

Results of the assignment of 19 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
014ecw_T_DA2_DT3NANNANT01.18OP18
024ecw_T_DT3_DT4BBBBB00690.17BB00
034ecw_T_DT4_DA5BBBBB00900.12BB00
044ecw_T_DA5_DT6B-ABA09820.28BA09
054ecw_T_DT6_DG7NANNANT00.46AB04
064ecw_T_DG7_DA8BBBBB00330.38BB00
074ecw_T_DA8_DC9BBBBB00930.14BB00
084ecw_T_DC9_DG10B12BB04480.28BB04
094ecw_T_DG10_DC11BBBBB00840.18BB00
104ecw_T_DC11_DT12BBBBB00790.28BB00
114ecw_P_DA1_DG2BBBBB00450.36BB00
124ecw_P_DG2_DC3BBBBB01810.17BB01
134ecw_P_DC3_DG4BBBBB01780.16BB01
144ecw_P_DG4_DT5BBBBB01690.16BB01
154ecw_P_DT5_DC6B-ABA05710.12BA05
164ecw_P_DC6_DA7B-ABA05550.26BA05
174ecw_P_DA7_DT.A8A-BAB01200.31AB01
184ecw_P_DA7_DT.B8AAAAA00110.37AA00
194ecw_P_DT.B8_DA.B9AAAAA00550.28AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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