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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Structures of HIV-1 RT and RNA-DNA Complex Reveal a Unique RT Conformation and Substrate Interface

Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
014b3p_D_DG1_DT2AAAAA00600.28AA00
024b3p_D_DT2_DG3AAAAA00830.20AA00
034b3p_D_DG3_DG4AAAAA00810.19AA00
044b3p_D_DG4_DT5AAAAA00790.29AA00
054b3p_D_DT5_DC6AAwAA01570.46AA01
064b3p_D_DC6_DG7AAAAA00870.21AA00
074b3p_D_DG7_DT8AAAAA00940.21AA00
084b3p_D_DT8_DA9AAAAA00900.27AA00
094b3p_D_DA9_DT10AAAAA00920.25AA00
104b3p_D_DT10_DG11AAAAA00930.25AA00
114b3p_D_DG11_DC12NANNANT00.44BB10
124b3p_D_DC12_DC13B-ABA05520.32BA05
134b3p_D_DC13_DT14AAAAA00790.31AA00
144b3p_D_DT14_DA15AAwAA01220.38AA01
154b3p_D_DA15_DT16AAAAA00930.18AA00
164b3p_D_DT16_DA17AAAAA00840.21AA00
174b3p_D_DA17_DG18AAAAA00750.19AA00
184b3p_D_DG18_DT19AAAAA00820.30AA00
194b3p_D_DT19_DT20AAAAA00860.28AA00
204b3p_D_DT20_DA21AAAAA00590.28AA00
214b3p_R_U14_A15AAAAA00900.15AA00
224b3p_R_A15_A16AAAAA00920.15AA00
234b3p_R_A16_C17AAAAA00720.25AA00
244b3p_R_C17_U18AAAAA00920.19AA00
254b3p_R_U18_A19AAAAA00920.18AA00
264b3p_R_A19_U20AAAAA00880.15AA00
274b3p_R_U20_A21AAAAA00890.15AA00
284b3p_R_A21_G22AAwAA01610.26AA01
294b3p_R_G22_G23AAAAA00790.20AA00
304b3p_R_G23_C24AAAAA00900.16AA00
314b3p_R_C24_A25AAAAA00930.15AA00
324b3p_R_A25_U26AAAAA00900.17AA00
334b3p_R_U26_A27AAAAA00930.16AA00
344b3p_R_A27_C28AAAAA00920.14AA00
354b3p_R_C28_G29AAAAA00910.14AA00
364b3p_R_G29_A30AAAAA00750.26AA00
374b3p_R_A30_C31AAAAA00880.22AA00
384b3p_R_C31_C32AAAAA00900.23AA00
394b3p_R_C32_A33AAAAA00940.17AA00
404b3p_R_A33_C34AAAAA00830.22AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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