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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structure of AddAB-DNA complex

Results of the assignment of 34 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013u44_X_DT1_DC2BBBBB00100.46BB00
023u44_X_DC2_DT3NANNANT00.54BB11
033u44_X_DT3_DA4NANNANT00.86AB02
043u44_X_DA4_DA5NANNANT00.82AB02
053u44_X_DA5_DT6NANNANT00.76BB08
063u44_X_DT6_DG7NANNANT01.16BB12
073u44_X_DG7_DC8BBBBB00640.39BB00
083u44_X_DC8_DG9BBwBB02360.32BB02
093u44_X_DG9_DA10NANNANT00.47BB02
103u44_X_DA10_DG11BBBBB00720.27BB00
113u44_X_DG11_DC12BBwBB02800.20BB02
123u44_X_DC12_DA13BBwBB02570.35BB02
133u44_X_DA13_DC14BBBBB00200.30BB00
143u44_X_DC14_DT15NANNANT00.49BB12
153u44_X_DT15_DG16NANNANT00.83BB15
163u44_X_DC28_DA29NANNANT00.83BB02
173u44_X_DA29_DG30BBBBB00180.49BB00
183u44_X_DG30_DT31NANNANT00.49BB02
193u44_X_DT31_DG32NANNANT00.55BB13
203u44_X_DG32_DC33BBwBB03340.33BB03
213u44_X_DC33_DT34BBwBB02450.41BB02
223u44_X_DT34_DC35BBwBB02750.34BB02
233u44_X_DC35_DG36BBBBB00520.24BB00
243u44_X_DG36_DC37BBBBB00820.15BB00
253u44_X_DC37_DA38BBwBB02860.21BB02
263u44_X_DA38_DT39BBBBB00610.35BB00
273u44_X_DT39_DT40NANNANT00.45BB10
283u44_X_DT40_DA41NANNANT00.36BB12
293u44_X_DA41_DG42BBwBB16280.46BB16
303u44_X_DG42_DA43BBwBB02640.25BB02
313u44_X_DA43_DT44NANNANT00.72BB02
323u44_X_DT44_DT45NANNANT01.92IC05
333u44_X_DT45_DT46NANNANT00.51BB15
343u44_X_DT46_DT47NANNANT01.00BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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