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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structure of aprataxin ortholog Hnt3 in complex with DNA and AMP

Results of the assignment of 52 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013spl_E_DT1_DA2NANNANT01.12OP07
023spl_E_DA2_DT3A-BAB04430.35AB04
033spl_E_DT3_DT4BBBBB00490.25BB00
043spl_E_DT4_DC5BBBBB00680.19BB00
053spl_E_DC5_DC6BBBBB01780.16BB01
063spl_E_DC6_DG7BBBBB00500.20BB00
073spl_E_DG7_DA8B12BB04930.12BB04
083spl_E_DA8_DT9BBBBB00860.15BB00
093spl_E_DT9_DA10BBBBB00870.20BB00
103spl_E_DA10_DG11BBBBB00750.32BB00
113spl_E_DG11_DT12NANNANT00.61AB03
123spl_E_DT12_DG13miBBB14580.35BB14
133spl_E_DG13_DA14BBBBB00890.15BB00
143spl_F_DG1_DT2NANNANT01.21OP07
153spl_F_DT2_DC3A-BAB05470.21AB05
163spl_F_DC3_DA4BBBBB00850.22BB00
173spl_F_DA4_DC5BBBBB00840.26BB00
183spl_F_DC5_DT6BBBBB00190.21BB00
193spl_F_DT6_DA7BBBBB00430.16BB00
203spl_F_DA7_DT8B12BB04290.21BB04
213spl_F_DT8_DC9BBBBB01660.17BB01
223spl_F_DC9_DG10B-ABA05230.21BA05
233spl_F_DG10_DG11NANNANT00.53BB03
243spl_F_DG11_DA12BBBBB00410.26BB00
253spl_F_DA12_DA13BBBBB00760.22BB00
263spl_F_DA13_DT14BBBBB00470.24BB00
273spl_G_DT1_DA2NANNANT01.13OP07
283spl_G_DA2_DT3A-BAB04500.36AB04
293spl_G_DT3_DT4BBBBB01690.23BB01
303spl_G_DT4_DC5BBBBB00500.21BB00
313spl_G_DC5_DC6BBBBB00620.16BB00
323spl_G_DC6_DG7BBBBB00780.18BB00
333spl_G_DG7_DA8B12BB04960.11BB04
343spl_G_DA8_DT9BBBBB00910.15BB00
353spl_G_DT9_DA10BBBBB00830.20BB00
363spl_G_DA10_DG11BBBBB00740.30BB00
373spl_G_DG11_DT12NANNANT00.55BA08
383spl_G_DT12_DG13NANNANT00.42BB14
393spl_G_DG13_DA14BBBBB00890.16BB00
403spl_H_DG1_DT2NANNANT01.06OP06
413spl_H_DT2_DC3A-BAB05500.20AB05
423spl_H_DC3_DA4BBBBB00810.22BB00
433spl_H_DA4_DC5BBBBB00710.31BB00
443spl_H_DC5_DT6BBBBB00230.21BB00
453spl_H_DT6_DA7BBBBB00460.18BB00
463spl_H_DA7_DT8B12BB04560.21BB04
473spl_H_DT8_DC9BBBBB00770.16BB00
483spl_H_DC9_DG10BBBBB00850.21BB00
493spl_H_DG10_DG11BBBBB00710.33BB00
503spl_H_DG11_DA12BBBBB00750.17BB00
513spl_H_DA12_DA13BBBBB00810.17BB00
523spl_H_DA13_DT14BBBBB00740.21BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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