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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structure of aprataxin ortholog Hnt3 in complex with DNA

Results of the assignment of 52 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013spd_E_DT1_DA2NANNANT01.81OP06
023spd_E_DA2_DT3A-BAB04540.37AB04
033spd_E_DT3_DT4BBBBB00730.25BB00
043spd_E_DT4_DC5BBBBB00740.21BB00
053spd_E_DC5_DC6BBBBB00590.19BB00
063spd_E_DC6_DG7BBBBB00730.18BB00
073spd_E_DG7_DA8B12BB04870.13BB04
083spd_E_DA8_DT9BBBBB01880.10BB01
093spd_E_DT9_DA10BBBBB00780.20BB00
103spd_E_DA10_DG11BBBBB00770.29BB00
113spd_E_DG11_DT12NANNANT00.52BA08
123spd_E_DT12_DG13miBBB14740.33BB14
133spd_E_DG13_DA14BBBBB00850.15BB00
143spd_F_DG1_DT2NANNANT01.84OP06
153spd_F_DT2_DC3A-BAB04450.39AB04
163spd_F_DC3_DA4BBBBB00750.24BB00
173spd_F_DA4_DC5BBBBB00790.29BB00
183spd_F_DC5_DT6BBBBB00300.18BB00
193spd_F_DT6_DA7BBBBB00520.20BB00
203spd_F_DA7_DT8B12BB04590.21BB04
213spd_F_DT8_DC9BBBBB01810.15BB01
223spd_F_DC9_DG10BBBBB01230.29BB01
233spd_F_DG10_DG11NANNANT00.52BB17
243spd_F_DG11_DA12BBBBB00470.25BB00
253spd_F_DA12_DA13BBBBB00790.19BB00
263spd_F_DA13_DT14BBBBB00420.22BB00
273spd_G_DT1_DA2NANNANT01.39ZZS2
283spd_G_DA2_DT3A-BAB04550.36AB04
293spd_G_DT3_DT4BBBBB01770.23BB01
303spd_G_DT4_DC5BBBBB00450.24BB00
313spd_G_DC5_DC6BBBBB00600.21BB00
323spd_G_DC6_DG7BBBBB00820.14BB00
333spd_G_DG7_DA8B12BB04910.13BB04
343spd_G_DA8_DT9BBBBB00770.14BB00
353spd_G_DT9_DA10BBBBB00680.22BB00
363spd_G_DA10_DG11BBBBB00880.25BB00
373spd_G_DG11_DT12B-ABA0560.32BA05
383spd_G_DT12_DG13miBBB14730.31BB14
393spd_G_DG13_DA14BBBBB00870.14BB00
403spd_H_DG1_DT2NANNANT01.85OP06
413spd_H_DT2_DC3A-BAB05470.19AB05
423spd_H_DC3_DA4BBBBB00830.23BB00
433spd_H_DA4_DC5BBBBB00760.31BB00
443spd_H_DC5_DT6BBBBB00350.20BB00
453spd_H_DT6_DA7BBBBB00540.21BB00
463spd_H_DA7_DT8B12BB04590.21BB04
473spd_H_DT8_DC9BBBBB01850.14BB01
483spd_H_DC9_DG10BBBBB00690.25BB00
493spd_H_DG10_DG11BBBBB00880.25BB00
503spd_H_DG11_DA12BBBBB00650.19BB00
513spd_H_DA12_DA13BBBBB00750.17BB00
523spd_H_DA13_DT14BBBBB00410.20BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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