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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structure of the Prototype Foamy Virus (PFV) N224H mutant intasome in complex with magnesium and Dolutegravir (S/GSK1349572)

Results of the assignment of 34 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013s3o_C_DA1_DT2NANNANT01.97OP15
023s3o_C_DT2_DT3BBwBB16360.69BB16
033s3o_C_DT3_DG4NANNANT00.55OP17
043s3o_C_DG4_DT5BBBBB01660.24BB01
053s3o_C_DT5_DC6BBBBB00110.29BB00
063s3o_C_DC6_DA7BB2BB07570.38BB07
073s3o_C_DA7_DT8B-ABA05750.24BA05
083s3o_C_DT8_DG9NANNANT00.38AB03
093s3o_C_DG9_DG10BB2BB08610.30BB08
103s3o_C_DG10_DA11BBBBB00430.22BB00
113s3o_C_DA11_DA12BBBBB00910.18BB00
123s3o_C_DA12_DT13BBBBB01800.17BB01
133s3o_C_DT13_DT14BBBBB01830.23BB01
143s3o_C_DT14_DT15BBBBB00800.16BB00
153s3o_C_DT15_DC16BBBBB00820.20BB00
163s3o_C_DC16_DG17BBBBB00430.29BB00
173s3o_C_DG17_DC18B-ABA05610.23BA05
183s3o_C_DC18_DA19BBBBB01480.27BB01
193s3o_D_DT1_DG2NANNANT00.74BB14
203s3o_D_DG2_DC3B-ABA08570.30BA08
213s3o_D_DC3_DG4BBBBB00180.40BB00
223s3o_D_DG4_DA5BBBBB00510.17BB00
233s3o_D_DA5_DA6BBBBB00460.30BB00
243s3o_D_DA6_DA7BBBBB00870.16BB00
253s3o_D_DA7_DT8BBBBB01880.20BB01
263s3o_D_DT8_DT9BBBBB01810.19BB01
273s3o_D_DT9_DC10BBBBB00900.18BB00
283s3o_D_DC10_DC11BBBBB00730.36BB00
293s3o_D_DC11_DA12BB2BB07840.27BB07
303s3o_D_DA12_DT13BBBBB01680.27BB01
313s3o_D_DT13_DG14BBBBB00420.26BB00
323s3o_D_DG14_DA15BBBBB00780.32BB00
333s3o_D_DA15_DC16B-ABA08570.29BA08
343s3o_D_DC16_DA.A17NANNANT01.52OP17

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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