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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and Dolutegravir (S/GSK1349572)

Results of the assignment of 34 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013s3m_C_DA1_DT2NANNANT01.97OP15
023s3m_C_DT2_DT3BBwBB16450.69BB16
033s3m_C_DT3_DG4NANNANT00.56OP17
043s3m_C_DG4_DT5BBBBB01620.24BB01
053s3m_C_DT5_DC6A-BAB03630.22AB03
063s3m_C_DC6_DA7BB2BB07600.38BB07
073s3m_C_DA7_DT8B-ABA05670.17BA05
083s3m_C_DT8_DG9A-BAB03510.37AB03
093s3m_C_DG9_DG10BB2BB08650.26BB08
103s3m_C_DG10_DA11BBBBB00840.21BB00
113s3m_C_DA11_DA12BBBBB00950.17BB00
123s3m_C_DA12_DT13BBBBB01830.16BB01
133s3m_C_DT13_DT14BBBBB01750.23BB01
143s3m_C_DT14_DT15BBBBB00910.15BB00
153s3m_C_DT15_DC16BBBBB00700.19BB00
163s3m_C_DC16_DG17BBBBB00100.36BB00
173s3m_C_DG17_DC18B-ABA05310.20BA05
183s3m_C_DC18_DA19A-BAB01530.42AB01
193s3m_D_DT1_DG2NANNANT00.70BB14
203s3m_D_DG2_DC3B-ABA08740.29BA08
213s3m_D_DC3_DG4BBBBB01150.44BB01
223s3m_D_DG4_DA5BBBBB00630.19BB00
233s3m_D_DA5_DA6miBBB10700.34BB10
243s3m_D_DA6_DA7BBBBB01820.16BB01
253s3m_D_DA7_DT8BBBBB01820.20BB01
263s3m_D_DT8_DT9BBBBB01380.20BB01
273s3m_D_DT9_DC10BBBBB00910.17BB00
283s3m_D_DC10_DC11BBBBB00740.34BB00
293s3m_D_DC11_DA12BB2BB07830.27BB07
303s3m_D_DA12_DT13BBBBB00460.28BB00
313s3m_D_DT13_DG14BBBBB00720.25BB00
323s3m_D_DG14_DA15BBBBB00590.43BB00
333s3m_D_DA15_DC16B-ABA08700.27BA08
343s3m_D_DC16_DA17NANNANT02.39BB1S

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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