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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structure of SUVH5 SRA- methylated CHH DNA complex

Results of the assignment of 19 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013q0f_B_DC1_DT2NANNANT00.68BB00
023q0f_B_DT2_DG3NANNANT00.30BB00
033q0f_B_DG3_DA4BB2BB07160.36BB07
043q0f_B_DA4_DG5BBBBB00130.40BB00
053q0f_B_DG5_DG6NANNANT01.33OP17
063q0f_B_DG6_DA7NANNANT01.57OP14
073q0f_B_DA7_DG8BBBBB00580.26BB00
083q0f_B_DG8_DT9BBBBB00810.20BB00
093q0f_B_DT9_DA10B12BB04570.35BB04
103q0f_B_DA10_DT11BBBBB00140.30BB00
113q0f_C_DT1_DA2NANNANT00.50BA08
123q0f_C_DA2_DC3NANNANT00.48AB03
133q0f_C_DC3_DT4A-BAB03670.40AB03
143q0f_C_DT4_5CM5NANNANT01.28OP17
153q0f_C_5CM5_DC6NANNANT00.80OP13
163q0f_C_DC6_DT7NANNANT00.48BB17
173q0f_C_DT7_DC8BBBBB00410.26BB00
183q0f_C_DC8_DA9BB2BB07340.24BB07
193q0f_C_DA9_DG10NANNANT00.39BB11

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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