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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

CRYSTAL STRUCTURE OF AN ENGINEERED CRO MONOMER BOUND NONSPECIFICALLY TO DNA

Results of the assignment of 14 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013orc_R_DT1_DA2BBBBB00340.32BB00
023orc_R_DA2_DT3miBBB15450.33BB15
033orc_R_DT3_DC4BBBBB00840.23BB00
043orc_R_DC4_DG5miBBB10320.44BB10
053orc_R_DG5_DA6B-ABA05560.34BA05
063orc_R_DA6_DT7NANNANT00.51AA04
073orc_R_DT7_DA8NANNANT00.58AB02
083orc_S_DT1_DA2BBBBB00340.32BB00
093orc_S_DA2_DT3miBBB15450.33BB15
103orc_S_DT3_DC4BBBBB00840.23BB00
113orc_S_DC4_DG5miBBB10320.44BB10
123orc_S_DG5_DA6B-ABA05560.34BA05
133orc_S_DA6_DT7NANNANT00.51AA04
143orc_S_DT7_DA8NANNANT00.58AB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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