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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Yeast DNA polymerase eta extending from an 8-oxoG lesion

Results of the assignment of 21 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013ohb_T_DT4_DG5BBBBB00290.47BB00
023ohb_T_DG5_8OG6BBBBB00580.26BB00
033ohb_T_8OG6_DA7B-ABA09880.12BA09
043ohb_T_DA7_DG8A-BAB04570.28AB04
053ohb_T_DG8_DG9BBwBB02440.32BB02
063ohb_T_DG9_DG10BBBBB01300.30BB01
073ohb_T_DG10_DG11BBBBB01440.23BB01
083ohb_T_DG11_DA12B12BB04630.29BB04
093ohb_T_DA12_DG13BBBBB00850.25BB00
103ohb_T_DG13_DG14BB2BB07710.19BB07
113ohb_T_DG14_DA15BBBBB00800.21BB00
123ohb_T_DA15_DC16BBBBB00500.27BB00
133ohb_P_DG1_DT2A-BAB05530.18AB05
143ohb_P_DT2_DC3BBBBB00840.24BB00
153ohb_P_DC3_DC4BBBBB01860.13BB01
163ohb_P_DC4_DT5BBBBB01930.15BB01
173ohb_P_DT5_DC6BBBBB01850.19BB01
183ohb_P_DC6_DC7B-ABA05770.26BA05
193ohb_P_DC7_DC8BBBBB01580.26BB01
203ohb_P_DC8_DC9NANNANT00.50BA08
213ohb_P_DC9_DT10AAAAA00780.30AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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