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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Yeast DNA polymerase eta inserting dCTP opposite an 8oxoG lesion

Results of the assignment of 21 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013oha_P_DG1_DT2A-BAB05510.19AB05
023oha_P_DT2_DC3BBBBB00830.24BB00
033oha_P_DC3_DC4BBBBB00770.13BB00
043oha_P_DC4_DT5BBBBB01940.14BB01
053oha_P_DT5_DC6BBBBB01840.20BB01
063oha_P_DC6_DC7B-ABA05800.26BA05
073oha_P_DC7_DC8A-BAB03740.37AB03
083oha_P_DC8_DC9B-ABA01220.30BA01
093oha_P_DC9_DT10AAAAA00540.34AA00
103oha_T_DT4_8OG5BBBBB00290.48BB00
113oha_T_8OG5_DG6BBBBB00660.25BB00
123oha_T_DG6_DA7B-ABA09930.11BA09
133oha_T_DA7_DG8AAAAA00190.49AA00
143oha_T_DG8_DG9A-BAB01140.33AB01
153oha_T_DG9_DG10B-ABA05500.21BA05
163oha_T_DG10_DG11A-BAB01570.30AB01
173oha_T_DG11_DA12B12BB04670.28BB04
183oha_T_DA12_DG13BBBBB00820.28BB00
193oha_T_DG13_DG14BB2BB07820.16BB07
203oha_T_DG14_DA15BBBBB00790.23BB00
213oha_T_DA15_DC16BBBBB00390.28BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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