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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Structural Basis for Proficient Incorporation of dTTP Opposite O6-methylguanine by Human DNA Polymerase Iota

Results of the assignment of 12 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013ngd_C_DA7_DG8BBBBB00610.26BB00
023ngd_C_DG8_DG9B-ABA08550.35BA08
033ngd_C_DG9_DA10NANNANT00.44AB02
043ngd_C_DA10_DC11AAAAA00550.31AA00
053ngd_C_DC11_DC12AAAAA04820.26AA04
063ngd_D_6OG840_DG841NANNANT00.44BBS1
073ngd_D_DG841_DG842B-ABA09890.21BA09
083ngd_D_DG842_DG843AAwAA01570.28AA01
093ngd_D_DG843_DT844AAAAA00640.28AA00
103ngd_D_DT844_DC845NANNANT00.58AA01
113ngd_D_DC845_DC846NANNANT00.86BB16
123ngd_D_DC846_DT847BBBBB00730.19BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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