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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

RB69 DNA Polymerase (Y567A) Ternary Complex with dATP Opposite Guanidinohydantoin

Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013nae_T_DT1_DC2OPNOP21310.32OP21
023nae_T_DC2_DA3BBBBB00340.52BB00
033nae_T_DG5_DT6A-BAB05850.27AB05
043nae_T_DT6_DA7BBBBB00660.27BB00
053nae_T_DA7_DA8BBBBB00710.27BB00
063nae_T_DA8_DG9B-ABA08860.32BA08
073nae_T_DG9_DC10A-BAB01510.27AB01
083nae_T_DC10_DA11BBBBB00750.29BB00
093nae_T_DA11_DG12B-ABA05830.17BA05
103nae_T_DG12_DT13BBBBB00140.35BB00
113nae_T_DT13_DC14BBBBB01800.26BB01
123nae_T_DC14_DC15BBBBB00640.24BB00
133nae_T_DC15_DG16B12BB04520.26BB04
143nae_T_DG16_DC17BBBBB00720.33BB00
153nae_T_DC17_DG18NANNANT01.22OP17
163nae_P_DG103_DC104BB2BB07470.41BB07
173nae_P_DC104_DG105NANNANT00.25BB10
183nae_P_DG105_DG106A-BAB02650.16AB02
193nae_P_DG106_DA107BBBBB00810.20BB00
203nae_P_DA107_DC108B-ABA01580.29BA01
213nae_P_DC108_DT109A-BAB01810.30AB01
223nae_P_DT109_DG110BBBBB01820.17BB01
233nae_P_DG110_DC111B-ABA05950.20BA05
243nae_P_DC111_DT112B-ABA05490.25BA05
253nae_P_DT112_DT113AAwAA0160.49AA01
263nae_P_DT113_DA114NANNANT00.54BB16

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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