Results of the assignment of 23 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
| step number | Step name | CANA | NtC | confal | rmsd | |
|---|---|---|---|---|---|---|
| 01 | 3kyl_E_C1_U2 | AAA | AA00 | 72 | 0.16 | AA00 |
| 02 | 3kyl_E_U2_G3 | AAA | AA00 | 64 | 0.28 | AA00 |
| 03 | 3kyl_E_G3_A4 | AAA | AA00 | 84 | 0.12 | AA00 |
| 04 | 3kyl_E_A4_C5 | AAA | AA00 | 83 | 0.21 | AA00 |
| 05 | 3kyl_E_C5_C6 | AAA | AA00 | 88 | 0.16 | AA00 |
| 06 | 3kyl_E_C6_U7 | AAA | AA00 | 36 | 0.27 | AA00 |
| 07 | 3kyl_E_U7_G8 | AAw | AA01 | 74 | 0.15 | AA01 |
| 08 | 3kyl_E_G8_A9 | AAA | AA00 | 71 | 0.19 | AA00 |
| 09 | 3kyl_E_A9_C10 | NAN | NANT | 0 | 0.39 | AB03 |
| 10 | 3kyl_E_C10_DT11 | NAN | NANT | 0 | 0.62 | OP13 |
| 11 | 3kyl_E_DT11_DT12 | NAN | NANT | 0 | 0.90 | OP22 |
| 12 | 3kyl_E_DT12_DC13 | NAN | NANT | 0 | 0.43 | OP20 |
| 13 | 3kyl_E_DC13_DG14 | BBB | BB00 | 25 | 0.52 | BB00 |
| 14 | 3kyl_E_DG14_DG15 | B12 | BB04 | 67 | 0.25 | BB04 |
| 15 | 3kyl_E_DG15_DT16 | BBB | BB00 | 69 | 0.22 | BB00 |
| 16 | 3kyl_E_DT16_DC17 | B-A | BA10 | 79 | 0.33 | BA10 |
| 17 | 3kyl_E_DC17_DA18 | NAN | NANT | 0 | 0.51 | AA00 |
| 18 | 3kyl_E_DA18_DG19 | NAN | NANT | 0 | 0.53 | AA01 |
| 19 | 3kyl_E_DG19_DG20 | AAw | AA01 | 38 | 0.29 | AA01 |
| 20 | 3kyl_E_DG20_DT21 | AAA | AA00 | 88 | 0.14 | AA00 |
| 21 | 3kyl_E_DT21_DC22 | AAA | AA00 | 97 | 0.11 | AA00 |
| 22 | 3kyl_E_DC22_DA23 | NAN | NANT | 0 | 0.68 | AA10 |
| 23 | 3kyl_E_DA23_DG24 | NAN | NANT | 0 | 0.81 | AA05 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Download
Results as csv or json file.Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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