DNATCO v3.2: results

Dpo4 extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesion

Results of the assignment of 45 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.

step number	Step name	CANA	NtC	confal	rmsd
01	3khg_D_DG802_DT803	NAN	NANT	0	1.09	AA06
02	3khg_D_DT803_DT804	miB	BB14	39	0.44	BB14
03	3khg_D_DT804_DG805	NAN	NANT	0	0.36	BB15
04	3khg_D_DG805_DG806	BBB	BB00	65	0.25	BB00
05	3khg_D_DG806_DA807	BBB	BB00	43	0.18	BB00
06	3khg_D_DA807_DT808	B-A	BA05	51	0.28	BA05
07	3khg_D_DT808_DG809	NAN	NANT	0	0.38	BB15
08	3khg_D_DG809_DG810	B12	BB04	39	0.28	BB04
09	3khg_D_DG810_DT811	BBB	BB00	56	0.23	BB00
10	3khg_D_DT811_DA812	BBB	BB00	42	0.29	BB00
11	3khg_D_DA812_DG813	BBB	BB00	52	0.17	BB00
12	3khg_E_DC901_DT902	A-B	AB01	24	0.35	AB01
13	3khg_E_DT902_DA903	OPN	OP21	21	0.43	OP21
14	3khg_E_DA903_DA904	B-A	BA01	18	0.28	BA01
15	3khg_E_DA904_DC905	NAN	NANT	0	0.34	OP02
16	3khg_E_DC905_DG906	NAN	NANT	0	0.27	AB2S
17	3khg_E_DG906_DC907	NAN	NANT	0	0.91	BBS1
18	3khg_E_DC907_DT908	A-B	AB05	45	0.24	AB05
19	3khg_E_DT908_DA909	BBB	BB00	82	0.21	BB00
20	3khg_E_DA909_DC910	BBB	BB01	76	0.18	BB01
21	3khg_E_DC910_DC911	BBB	BB00	50	0.25	BB00
22	3khg_E_DC911_DA912	NAN	NANT	0	0.42	BB10
23	3khg_E_DA912_DT913	miB	BB10	68	0.29	BB10
24	3khg_E_DT913_DC914	miB	BB10	75	0.28	BB10
25	3khg_E_DC914_DC915	miB	BB10	60	0.31	BB10
26	3khg_E_DC915_DA916	NAN	NANT	0	0.65	BB13
27	3khg_E_DA916_DA917	NAN	NANT	0	0.37	BB17
28	3khg_E_DA917_DC918	NAN	NANT	0	0.22	BB10
29	3khg_E_DC918_DC919	NAN	NANT	0	0.56	BA16
30	3khg_H_DG1806_DA1807	NAN	NANT	0	0.55	BA05
31	3khg_H_DA1807_DT1808	NAN	NANT	0	0.68	BB10
32	3khg_H_DT1808_DG1809	NAN	NANT	0	0.53	AA02
33	3khg_H_DG1809_DG1810	NAN	NANT	0	0.47	BB10
34	3khg_H_DG1810_DT1811	BBB	BB00	34	0.37	BB00
35	3khg_H_DT1811_DA1812	BBB	BB01	84	0.24	BB01
36	3khg_H_DA1812_DG1813	BBB	BB00	57	0.33	BB00
37	3khg_J_DC1905_DG1906	NAN	NANT	0	0.66	BB03
38	3khg_J_DG1906_DC1907	NAN	NANT	0	0.80	AAS1
39	3khg_J_DC1907_DT1908	BBB	BB00	57	0.25	BB00
40	3khg_J_DT1908_DA1909	B-A	BA08	51	0.39	BA08
41	3khg_J_DA1909_DC1910	A-B	AB03	82	0.28	AB03
42	3khg_J_DC1910_DC1911	B12	BB04	70	0.27	BB04
43	3khg_J_DC1911_DA1912	BB2	BB07	33	0.34	BB07
44	3khg_J_DA1912_DT1913	NAN	NANT	0	0.41	BB02
45	3khg_J_DT1913_DC1914	NAN	NANT	0	0.56	BB11

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

δ1

ε1

ζ1

α2

β2

γ2

δ2

χ1

χ2

μ

NN

CC

step_torsions

ntC_average

Δ torsions

torsion scores

comments step confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

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A

A-B

B-A

IC

OPN

Z

N

Click the Summary/Torsions/Similar/... tabs for more details.
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