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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Dpo4 extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesion

Results of the assignment of 45 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013khg_D_DG802_DT803NANNANT01.09AA06
023khg_D_DT803_DT804miBBB14390.44BB14
033khg_D_DT804_DG805NANNANT00.36BB15
043khg_D_DG805_DG806BBBBB00650.25BB00
053khg_D_DG806_DA807BBBBB00430.18BB00
063khg_D_DA807_DT808B-ABA05510.28BA05
073khg_D_DT808_DG809NANNANT00.38BB15
083khg_D_DG809_DG810B12BB04390.28BB04
093khg_D_DG810_DT811BBBBB00560.23BB00
103khg_D_DT811_DA812BBBBB00420.29BB00
113khg_D_DA812_DG813BBBBB00520.17BB00
123khg_E_DC901_DT902A-BAB01240.35AB01
133khg_E_DT902_DA903OPNOP21210.43OP21
143khg_E_DA903_DA904B-ABA01180.28BA01
153khg_E_DA904_DC905NANNANT00.34OP02
163khg_E_DC905_DG906NANNANT00.27AB2S
173khg_E_DG906_DC907NANNANT00.91BBS1
183khg_E_DC907_DT908A-BAB05450.24AB05
193khg_E_DT908_DA909BBBBB00820.21BB00
203khg_E_DA909_DC910BBBBB01760.18BB01
213khg_E_DC910_DC911BBBBB00500.25BB00
223khg_E_DC911_DA912NANNANT00.42BB10
233khg_E_DA912_DT913miBBB10680.29BB10
243khg_E_DT913_DC914miBBB10750.28BB10
253khg_E_DC914_DC915miBBB10600.31BB10
263khg_E_DC915_DA916NANNANT00.65BB13
273khg_E_DA916_DA917NANNANT00.37BB17
283khg_E_DA917_DC918NANNANT00.22BB10
293khg_E_DC918_DC919NANNANT00.56BA16
303khg_H_DG1806_DA1807NANNANT00.55BA05
313khg_H_DA1807_DT1808NANNANT00.68BB10
323khg_H_DT1808_DG1809NANNANT00.53AA02
333khg_H_DG1809_DG1810NANNANT00.47BB10
343khg_H_DG1810_DT1811BBBBB00340.37BB00
353khg_H_DT1811_DA1812BBBBB01840.24BB01
363khg_H_DA1812_DG1813BBBBB00570.33BB00
373khg_J_DC1905_DG1906NANNANT00.66BB03
383khg_J_DG1906_DC1907NANNANT00.80AAS1
393khg_J_DC1907_DT1908BBBBB00570.25BB00
403khg_J_DT1908_DA1909B-ABA08510.39BA08
413khg_J_DA1909_DC1910A-BAB03820.28AB03
423khg_J_DC1910_DC1911B12BB04700.27BB04
433khg_J_DC1911_DA1912BB2BB07330.34BB07
443khg_J_DA1912_DT1913NANNANT00.41BB02
453khg_J_DT1913_DC1914NANNANT00.56BB11

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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