Click the Summary/Torsions/Similar/... tabs for more details.
Center view on step or molecule.
Show reference and contacts model altloc

Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structure of E.coli Pol II-normal DNA-dCTP ternary complex

Results of the assignment of 27 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013k59_T_DT802_DA803NANNANT01.25OP31
023k59_T_DA803_DG804NANNANT01.08OP17
033k59_T_DG804_DG805AAAAA00340.20AA00
043k59_T_DG805_DT806A-BAB05310.30AB05
053k59_T_DT806_DA807BBBBB00750.24BB00
063k59_T_DA807_DC808BBBBB01660.25BB01
073k59_T_DC808_DG809BBBBB00240.36BB00
083k59_T_DG809_DC810B-ABA05860.23BA05
093k59_T_DC810_DT811BBBBB00210.32BB00
103k59_T_DT811_DA812BBBBB00810.23BB00
113k59_T_DA812_DG813BBBBB00830.28BB00
123k59_T_DG813_DG814BBBBB00770.21BB00
133k59_T_DG814_DC815B-ABA08710.30BA08
143k59_T_DC815_DA816A-BAB03850.22AB03
153k59_T_DA816_DC817BBBBB01290.25BB01
163k59_T_DC817_DA818miBBB12160.48BB12
173k59_P_DG901_DT902BBBBB00690.28BB00
183k59_P_DT902_DG903BBBBB00640.16BB00
193k59_P_DG903_DC904BBBBB00810.18BB00
203k59_P_DC904_DC905BBBBB00770.20BB00
213k59_P_DC905_DT906BBBBB00780.19BB00
223k59_P_DT906_DA907BB2BB07420.41BB07
233k59_P_DA907_DG908BBBBB00190.31BB00
243k59_P_DG908_DC909BBBBB01740.24BB01
253k59_P_DC909_DG910BBBBB01750.21BB01
263k59_P_DG910_DT911B-ABA05830.30BA05
273k59_P_DT911_DA912A-BAB03500.40AB03

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show



Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N