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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-monochloromethylene triphosphate

Results of the assignment of 27 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013jpo_D_DG1_DT2BBBBB01710.23BB01
023jpo_D_DT2_DC3B-ABA05770.28BA05
033jpo_D_DC3_DG4A-BAB01760.08AB01
043jpo_D_DG4_DG5BBBBB00700.27BB00
053jpo_P_DG1_DC2NANNANT00.39AB04
063jpo_P_DC2_DT3BBBBB00240.23BB00
073jpo_P_DT3_DG4B-ABA08710.36BA08
083jpo_P_DG4_DA5A-BAB03570.30AB03
093jpo_P_DA5_DT6BBBBB00780.14BB00
103jpo_P_DT6_DG7BBBBB00830.22BB00
113jpo_P_DG7_DC8B-ABA05880.07BA05
123jpo_P_DC8_DG9BBBBB01470.23BB01
133jpo_T_DC1_DC2BBwBB16690.28BB16
143jpo_T_DC2_DG3BB2BB07610.24BB07
153jpo_T_DG3_DA4B-ABA01570.21BA01
163jpo_T_DA4_DC5NANNANT00.57AA02
173jpo_T_DC5_DC6NANNANT01.28OP21
183jpo_T_DC6_DG7B-ABA05670.20BA05
193jpo_T_DG7_DC8A-BAB03560.36AB03
203jpo_T_DC8_DG9B12BB04380.41BB04
213jpo_T_DG9_DC10BBBBB00820.16BB00
223jpo_T_DC10_DA11BBBBB00890.18BB00
233jpo_T_DA11_DT12BBBBB01670.21BB01
243jpo_T_DT12_DC13B-ABA0590.35BA05
253jpo_T_DC13_DA14A-BAB01910.16AB01
263jpo_T_DA14_DG15BBBBB00910.22BB00
273jpo_T_DG15_DC16B-ABA01670.16BA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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