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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structure of restriction endonuclease EcoRII N-terminal effector-binding domain in complex with cognate DNA

Results of the assignment of 16 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013hqf_B_DG-4_DC-3B-ABA05660.22BA05
023hqf_B_DC-3_DC-2NANNANT00.35BB01
033hqf_B_DC-2_DC-1NANNANT00.33BB01
043hqf_B_DC-1_DT0B-ABA01390.23BA01
053hqf_B_DT0_DG1A-BAB01720.23AB01
063hqf_B_DG1_DG2BBBBB00810.24BB00
073hqf_B_DG2_DC3miBBB15780.23BB15
083hqf_B_DC3_DG4BBBBB00840.25BB00
093hqf_C_DC-4_DG-3NANNANT00.39BB03
103hqf_C_DG-3_DC-2BBBBB00810.22BB00
113hqf_C_DC-2_DC-1BBBBB00680.28BB00
123hqf_C_DC-1_DA0NANNANT00.40BB13
133hqf_C_DA0_DG1BBwBB16310.43BB16
143hqf_C_DG1_DG2BB2BB07800.28BB07
153hqf_C_DG2_DG3BBBBB01510.18BB01
163hqf_C_DG3_DC4B-ABA05800.22BA05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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