Conformers:
ABBIImiBZICOPNSYNN
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Complete RNA polymerase II elongation complex II
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 29 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3hov_T_DG12_DT13 | NAN | NANT | 0 | 0.46 |
| 02 | 3hov_T_DT13_DA14 | B12 | BB04 | 32 | 0.42 |
| 03 | 3hov_T_DA14_DG15 | BBB | BB00 | 57 | 0.37 |
| 04 | 3hov_T_DG15_DT16 | BBw | BB02 | 49 | 0.41 |
| 05 | 3hov_T_DT16_DT17 | BBB | BB00 | 41 | 0.33 |
| 06 | 3hov_T_DT17_DA18 | NAN | NANT | 0 | 1.22 |
| 07 | 3hov_T_DA18_DT19 | BBB | BB00 | 44 | 0.44 |
| 08 | 3hov_T_DT19_DG20 | BBB | BB00 | 66 | 0.20 |
| 09 | 3hov_T_DG20_DC21 | BBB | BB00 | 61 | 0.29 |
| 10 | 3hov_T_DC21_DC22 | BBB | BB00 | 60 | 0.28 |
| 11 | 3hov_T_DC22_BRU23 | BBw | BB02 | 33 | 0.34 |
| 12 | 3hov_T_BRU23_DG24 | miB | BB13 | 57 | 0.36 |
| 13 | 3hov_T_DG24_DG25 | NAN | NANT | 0 | 0.64 |
| 14 | 3hov_T_DG25_DT26 | BBB | BB00 | 47 | 0.27 |
| 15 | 3hov_T_DT26_DC27 | BBB | BB00 | 68 | 0.33 |
| 16 | 3hov_T_DC27_DA28 | BBB | BB00 | 15 | 0.69 |
| 17 | 3hov_N_DA1_DC2 | BBB | BB00 | 30 | 0.43 |
| 18 | 3hov_N_DC2_DT3 | BBB | BB00 | 69 | 0.34 |
| 19 | 3hov_N_DT3_DA4 | B12 | BB04 | 55 | 0.22 |
| 20 | 3hov_N_DA4_DC5 | BBB | BB00 | 17 | 0.53 |
| 21 | 3hov_P_C1_G2 | NAN | NANT | 0 | 0.48 |
| 22 | 3hov_P_G2_A3 | AAA | AA08 | 68 | 0.28 |
| 23 | 3hov_P_A3_C4 | AAA | AA08 | 85 | 0.25 |
| 24 | 3hov_P_C4_C5 | AAA | AA00 | 95 | 0.15 |
| 25 | 3hov_P_C5_A6 | AAA | AA00 | 78 | 0.21 |
| 26 | 3hov_P_A6_G7 | AAw | AA01 | 65 | 0.27 |
| 27 | 3hov_P_G7_G8 | AAA | AA08 | 84 | 0.15 |
| 28 | 3hov_P_G8_C9 | AAA | AA00 | 63 | 0.26 |
| 29 | 3hov_P_C9_A10 | AAA | AA04 | 29 | 0.61 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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