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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Complete RNA polymerase II elongation complex II

Results of the assignment of 29 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013hov_T_DG12_DT13NANNANT00.46BB17
023hov_T_DT13_DA14B12BB04320.42BB04
033hov_T_DA14_DG15BBBBB00570.37BB00
043hov_T_DG15_DT16BBwBB02490.41BB02
053hov_T_DT16_DT17BBBBB00410.33BB00
063hov_T_DT17_DA18NANNANT01.22OP06
073hov_T_DA18_DT19BBBBB00440.44BB00
083hov_T_DT19_DG20BBBBB00660.20BB00
093hov_T_DG20_DC21BBBBB00610.29BB00
103hov_T_DC21_DC22BBBBB00600.28BB00
113hov_T_DC22_BRU23BBwBB02330.34BB02
123hov_T_BRU23_DG24miBBB13570.36BB13
133hov_T_DG24_DG25NANNANT00.64BB02
143hov_T_DG25_DT26BBBBB00470.27BB00
153hov_T_DT26_DC27BBBBB00680.33BB00
163hov_T_DC27_DA28BBBBB00150.69BB00
173hov_N_DA1_DC2BBBBB00300.43BB00
183hov_N_DC2_DT3BBBBB00690.34BB00
193hov_N_DT3_DA4B12BB04550.22BB04
203hov_N_DA4_DC5BBBBB00170.53BB00
213hov_P_C1_G2NANNANT00.48AA12
223hov_P_G2_A3AAAAA08680.28AA08
233hov_P_A3_C4AAAAA08850.25AA08
243hov_P_C4_C5AAAAA00950.15AA00
253hov_P_C5_A6AAAAA00780.21AA00
263hov_P_A6_G7AAwAA01650.27AA01
273hov_P_G7_G8AAAAA08840.15AA08
283hov_P_G8_C9AAAAA00630.26AA00
293hov_P_C9_A10AAAAA04290.61AA04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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