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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Ternary complex of human DNA polymerase iota with template U/T and incoming dGTP

Results of the assignment of 15 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013h4d_P_DA867_DG868BBBBB00450.30BB00
023h4d_P_DG868_DG869BBBBB00550.33BB00
033h4d_P_DG869_DA870BBwBB02290.41BB02
043h4d_P_DA870_DC871BBBBB00460.28BB00
053h4d_P_DC871_DC872BBBBB00350.39BB00
063h4d_T_DT839_BRU.A840NANNANT00.97AB02
073h4d_T_DT839_BRU.B840NANNANT01.09AB02
083h4d_T_BRU.A840_DG841BBBBB00500.45BB00
093h4d_T_BRU.B840_DG841SYNBBS1470.38BBS1
103h4d_T_DG841_DG842NANNANT00.52BB02
113h4d_T_DG842_DG843BBwBB02180.39BB02
123h4d_T_DG843_DT844BBBBB00480.34BB00
133h4d_T_DT844_DC845BBBBB00690.15BB00
143h4d_T_DC845_DC846BBBBB00680.33BB00
153h4d_T_DC846_DT847BBwBB02660.22BB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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