Click the Summary/Torsions/Similar/... tabs for more details.
Center view on step or molecule.
Show reference and contacts model altloc

Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Human DNA polymerase iota in complex with T template DNA and incoming dTTP

Results of the assignment of 13 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013gv7_T_DA839_DT840NANNANT00.39IC06
023gv7_T_DT840_DG841BBBBB00580.41BB00
033gv7_T_DG841_DG842B-ABA09810.22BA09
043gv7_T_DG842_DG843AAwAA01270.37AA01
053gv7_T_DG843_DT844AAAAA00850.20AA00
063gv7_T_DT844_DC845A-BAB01740.26AB01
073gv7_T_DC845_DC846BBBBB00830.22BB00
083gv7_T_DC846_DT847BBBBB00230.27BB00
093gv7_P_DA867_DG868BBBBB01400.29BB01
103gv7_P_DG868_DG869miBBB10380.23BB10
113gv7_P_DG869_DA870B-ABA10410.48BA10
123gv7_P_DA870_DC871AAAAA00620.28AA00
133gv7_P_DC871_DC872AAAAA00840.18AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show



Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N