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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

DNA Polymerase PolC from Geobacillus kaustophilus complex with DNA, dGTP and Mn

Results of the assignment of 28 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013f2c_P_DG5_DA6NANNANT00.54AB02
023f2c_P_DA6_DG7BBBBB00620.22BB00
033f2c_P_DG7_DA8NANNANT00.33BB04
043f2c_P_DA8_DC9BBBBB01220.30BB01
053f2c_P_DC9_DG10BBBBB00180.24BB00
063f2c_P_DG10_DG11BBBBB00680.30BB00
073f2c_P_DG11_DG12BBBBB00650.15BB00
083f2c_P_DG12_DC13BBBBB00100.29BB00
093f2c_P_DC13_DA14BBBBB00290.27BB00
103f2c_P_DA14_DA15BBBBB00860.17BB00
113f2c_P_DA15_DC16BBBBB01580.23BB01
123f2c_T_DA1_DT2BBBBB00670.28BB00
133f2c_T_DT2_DA3NANNANT00.63BB16
143f2c_T_DA3_DA4B-ABA05490.32BA05
153f2c_T_DA4_DC5NANNANT00.65OP29
163f2c_T_DC5_DG6BBBBB00840.25BB00
173f2c_T_DG6_DG7BBBBB01900.14BB01
183f2c_T_DG7_DT8NANNANT00.41BA05
193f2c_T_DT8_DT9NANNANT00.25AB01
203f2c_T_DT9_DG10BBBBB00810.18BB00
213f2c_T_DG10_DC11BBBBB00440.38BB00
223f2c_T_DC11_DC12BBBBB00960.14BB00
233f2c_T_DC12_DC13BBBBB00700.22BB00
243f2c_T_DC13_DG14B12BB04880.13BB04
253f2c_T_DG14_DT15BBBBB01620.15BB01
263f2c_T_DT15_DC16miBBB10470.32BB10
273f2c_T_DC16_DT17NANNANT00.44BB03
283f2c_T_DT17_DC18NANNANT00.40BB10

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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