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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal Structure Of Tn5 Transposase Complexed With 5' Phosphorylated Transposon End DNA

Results of the assignment of 38 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013ecp_B_DG1_DA2BBwBB17130.46BB17
023ecp_B_DA2_DC3BBBBB00750.32BB00
033ecp_B_DC3_DT4miBBB10640.48BB10
043ecp_B_DT4_DT5BBBBB00260.35BB00
053ecp_B_DT5_DG6BBBBB00410.39BB00
063ecp_B_DG6_DT7BBBBB00650.35BB00
073ecp_B_DT7_DG8BBBBB00860.20BB00
083ecp_B_DG8_DT9BBBBB01450.23BB01
093ecp_B_DT9_DA10A-BAB03780.32AB03
103ecp_B_DA10_DT11BBBBB01480.20BB01
113ecp_B_DT11_DA12B-ABA05470.16BA05
123ecp_B_DA12_DA13A-BAB03890.23AB03
133ecp_B_DA13_DG14BB2BB07670.27BB07
143ecp_B_DG14_DA15BBBBB00760.23BB00
153ecp_B_DA15_DG16BBBBB01450.15BB01
163ecp_B_DG16_DT17BBBBB01540.24BB01
173ecp_B_DT17_DC18BBBBB00330.27BB00
183ecp_B_DC18_DA19NANNANT00.65BB00
193ecp_B_DA19_DG20NANNANT00.41AB02
203ecp_C_DC1_DT2NANNANT02.17OP28
213ecp_C_DT2_DG3NANNANT01.39OP11
223ecp_C_DG3_DA4NANNANT00.56BB16
233ecp_C_DA4_DC5B-ABA10540.31BA10
243ecp_C_DC5_DT6A-BAB05300.24AB05
253ecp_C_DT6_DC7BBBBB00400.19BB00
263ecp_C_DC7_DT8BBBBB01320.26BB01
273ecp_C_DT8_DT9BBBBB01210.25BB01
283ecp_C_DT9_DA10B-ABA10440.29BA10
293ecp_C_DA10_DT11NANNANT00.53BB16
303ecp_C_DT11_DA12BBBBB00510.35BB00
313ecp_C_DA12_DC13NANNANT00.37BB02
323ecp_C_DC13_DA14NANNANT00.36BB00
333ecp_C_DA14_DC15BBBBB00450.29BB00
343ecp_C_DC15_DA16B12BB04740.19BB04
353ecp_C_DA16_DA17BBBBB00540.16BB00
363ecp_C_DA17_DG18B-ABA16190.26BA16
373ecp_C_DG18_DT19NANNANT00.56BB03
383ecp_C_DT19_DC20NANNANT00.44BA05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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