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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Structural Basis for Dimerization in DNA Recognition by Gal4

Results of the assignment of 38 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013coq_D_DA1_DC2B-ABA05460.34BA05
023coq_D_DC2_DC3NANNANT00.28AB03
033coq_D_DC3_DG4BB2BB07630.34BB07
043coq_D_DG4_DG5miBBB15350.47BB15
053coq_D_DG5_DA6NANNANT00.59BB10
063coq_D_DA6_DG7NANNANT00.58BA08
073coq_D_DG7_DG8BBBBB00500.19BB00
083coq_D_DG8_DA9B12BB04590.32BB04
093coq_D_DA9_DC10BBBBB00680.24BB00
103coq_D_DC10_DA11BBBBB00650.32BB00
113coq_D_DA11_DG12BBBBB01730.20BB01
123coq_D_DG12_DT13NANNANT00.63BB00
133coq_D_DT13_DC14BBBBB00380.42BB00
143coq_D_DC14_DC15B-ABA16540.23BA16
153coq_D_DC15_DT16A-BAB01410.28AB01
163coq_D_DT16_DC17BBBBB00820.34BB00
173coq_D_DC17_DC18BB2BB07870.27BB07
183coq_D_DC18_DG19BBBBB00600.36BB00
193coq_D_DG19_DG20BB2BB07780.25BB07
203coq_E_DT21_DC22BBBBB01530.26BB01
213coq_E_DC22_DC23NANNANT00.54BB11
223coq_E_DC23_DG24BB2BB07440.40BB07
233coq_E_DG24_DG25BBBBB00680.35BB00
243coq_E_DG25_DA26BB2BB07760.35BB07
253coq_E_DA26_DG27BBBBB01250.22BB01
263coq_E_DG27_DG28BBBBB00790.32BB00
273coq_E_DG28_DA29BB2BB07330.32BB07
283coq_E_DA29_DC30BBBBB00360.31BB00
293coq_E_DC30_DT31B12BB04770.20BB04
303coq_E_DT31_DG32BBBBB00670.26BB00
313coq_E_DG32_DT33NANNANT00.65BB00
323coq_E_DT33_DC34BBBBB00580.45BB00
333coq_E_DC34_DC35B-ABA16760.25BA16
343coq_E_DC35_DT36A-BAB05740.18AB05
353coq_E_DT36_DC37BBBBB00800.37BB00
363coq_E_DC37_DC38BB2BB07530.35BB07
373coq_E_DC38_DG39BBBBB00130.42BB00
383coq_E_DG39_DG40NANNANT00.54BB14

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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