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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

CSL (Lag-1) bound to DNA with Lin-12 RAM peptide, C2221

Results of the assignment of 28 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013brf_B_DT1_DT2B12BB04220.35BB04
023brf_B_DT2_DA3BBBBB00710.20BB00
033brf_B_DA3_DC4BBBBB00630.20BB00
043brf_B_DC4_DT5BBBBB00700.23BB00
053brf_B_DT5_DG6NANNANT00.52BB03
063brf_B_DG6_DT7BBBBB01550.36BB01
073brf_B_DT7_DG8BBBBB00580.30BB00
083brf_B_DG8_DG9BBBBB00790.19BB00
093brf_B_DG9_DG10BBBBB00780.26BB00
103brf_B_DG10_DA11BBBBB00840.27BB00
113brf_B_DA11_DA12BBBBB00790.13BB00
123brf_B_DA12_DA13BBBBB00730.20BB00
133brf_B_DA13_DG14miBBB15500.28BB15
143brf_B_DG14_DA15NANNANT00.36BB02
153brf_C_DA1_DA2SYNBBS1860.20BBS1
163brf_C_DA2_DT3BBBBB01590.17BB01
173brf_C_DT3_DC4BBBBB00280.27BB00
183brf_C_DC4_DT5BBBBB00600.33BB00
193brf_C_DT5_DT6BBBBB00630.15BB00
203brf_C_DT6_DT7BBBBB01900.16BB01
213brf_C_DT7_DC8BBBBB01790.20BB01
223brf_C_DC8_DC9BBBBB01400.15BB01
233brf_C_DC9_DC10BBBBB01510.27BB01
243brf_C_DC10_DA11B12BB04780.24BB04
253brf_C_DA11_DC12BBBBB00780.21BB00
263brf_C_DC12_DA13BBBBB00550.33BB00
273brf_C_DA13_DG14NANNANT00.50BA16
283brf_C_DG14_DT15NANNANT00.39BB03

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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