Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
RNA stemloop operator from bacteriophage QBETA complexed with an N87S,E89K mutant MS2 capsid
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 10 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2b2d_R_G307_U308 | AAA | AA00 | 93 | 0.19 |
| 02 | 2b2d_R_U308_C309 | AAA | AA00 | 94 | 0.22 |
| 03 | 2b2d_R_C309_U310 | OPN | OP09 | 25 | 0.62 |
| 04 | 2b2d_R_U310_A311 | NAN | NANT | 0 | 0.64 |
| 05 | 2b2d_R_A311_A312 | NAN | NANT | 0 | 1.27 |
| 06 | 2b2d_R_A312_G313 | NAN | NANT | 0 | 0.37 |
| 07 | 2b2d_R_G313_A314 | NAN | NANT | 0 | 0.64 |
| 08 | 2b2d_R_A314_C315 | AAA | AA08 | 18 | 0.42 |
| 09 | 2b2d_S_A411_A412 | NAN | NANT | 0 | 0.92 |
| 10 | 2b2d_S_A412_G413 | NAN | NANT | 0 | 1.82 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|