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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Solution structure of domain I of the negative polarity CChMVd hammerhead ribozyme

Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012ro2_A_G1_G2AAAAA00810.17AA00
022ro2_A_G2_G3AAAAA00830.17AA00
032ro2_A_G3_A4AAAAA00820.11AA00
042ro2_A_A4_G5AAAAA00800.23AA00
052ro2_A_G5_A6AAAAA00840.20AA00
062ro2_A_A6_C7AAAAA00900.13AA00
072ro2_A_C7_C8AAAAA00840.18AA00
082ro2_A_C8_U9AAAAA00670.36AA00
092ro2_A_U9_G10A-BAB05450.35AB05
102ro2_A_G10_A11BB2BB07210.61BB07
112ro2_A_A11_A12NANNANT00.67BB20
122ro2_A_A12_G13BB2BB0750.71BB07
132ro2_A_G13_U14NANNANT00.83OP25
142ro2_A_U14_G15NANNANT01.19OP17
152ro2_A_G15_G16AAAAA04160.52AA04
162ro2_A_G16_G17AAAAA00830.17AA00
172ro2_A_G17_U18AAAAA00850.19AA00
182ro2_A_U18_U19AAAAA00750.30AA00
192ro2_A_U19_U20AAAAA00810.20AA00
202ro2_A_U20_C21AAAAA00840.17AA00
212ro2_A_C21_C22AAAAA00850.17AA00
222ro2_A_C22_C23AAAAA00840.18AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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