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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

d(ATTTAGTTAACTAAAT) complexed with MMLV RT catalytic fragment

Results of the assignment of 14 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012r2t_B_DA1_DT2BBwBB02820.19BB02
022r2t_B_DT2_DT3BBwBB02830.19BB02
032r2t_B_DT3_DT4BBwBB02640.31BB02
042r2t_B_DT4_DA5BBBBB00560.38BB00
052r2t_B_DA5_DG6BBwBB02760.23BB02
062r2t_B_DG6_DT7BBwBB02820.21BB02
072r2t_B_DT7_DT8BBBBB00770.22BB00
082r2t_G_DA9_DA10B12BB04790.23BB04
092r2t_G_DA10_DC11BBwBB02830.17BB02
102r2t_G_DC11_DT12BBwBB02810.19BB02
112r2t_G_DT12_DA13BBwBB02270.42BB02
122r2t_G_DA13_DA14BBwBB02590.34BB02
132r2t_G_DA14_DA15BBwBB02490.39BB02
142r2t_G_DA15_DT16BBBBB00810.29BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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