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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Variant 16 of Ribonucleoprotein Core of the E. Coli Signal Recognition Particle

Results of the assignment of 48 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012pxu_B_G130_G131AAAAA08790.13AA08
022pxu_B_G131_U132AAAAA00800.20AA00
032pxu_B_U132_G133AAAAA00570.22AA00
042pxu_B_G133_C134AAAAA00890.17AA00
052pxu_B_C134_U135AAAAA00840.13AA00
062pxu_B_U135_G136AAAAA00920.13AA00
072pxu_B_G136_U137AAAAA00810.25AA00
082pxu_B_U137_U138AAAAA00790.20AA00
092pxu_B_U138_U139AAAAA00340.28AA00
102pxu_B_U139_A140NANNANT01.42OP17
112pxu_B_A140_C141AAAAA08690.24AA08
122pxu_B_C141_C142AAAAA00120.49AA00
132pxu_B_C142_A143NANNANT00.85OP06
142pxu_B_A143_G144NANNANT00.72OP29
152pxu_B_G144_G145AAAAA00730.21AA00
162pxu_B_G145_U146AAAAA00840.17AA00
172pxu_B_U146_C147AAAAA08630.50AA08
182pxu_B_C147_A148AAuAA13870.27AA13
192pxu_B_A148_G149AAAAA08220.57AA08
202pxu_B_G149_G150AAAAA08880.25AA08
212pxu_B_G150_U151AAAAA00860.25AA00
222pxu_B_U151_C152AAAAA00920.21AA00
232pxu_B_C152_C153AAAAA00860.14AA00
242pxu_B_C153_G154AAAAA00830.27AA00
252pxu_B_G154_A155OPNOP03770.13OP03
262pxu_B_A155_A156AAAAA08830.34AA08
272pxu_B_A156_A157AAAAA00230.35AA00
282pxu_B_A157_G158AAwAA05840.26AA05
292pxu_B_G158_G159AAwAA01640.24AA01
302pxu_B_G159_A160AAAAA08760.24AA08
312pxu_B_A160_A161AAAAA08900.19AA08
322pxu_B_A161_G162AAAAA00190.53AA00
332pxu_B_G162_C163AAuAA12780.41AA12
342pxu_B_C163_A164AAAAA00820.24AA00
352pxu_B_A164_G165AAAAA00440.40AA00
362pxu_B_G165_C166AAAAA08700.27AA08
372pxu_B_C166_C167AAAAA00870.13AA00
382pxu_B_C167_A168AAAAA00550.38AA00
392pxu_B_A168_A169AAAAA00550.28AA00
402pxu_B_A169_G170AAAAA00890.14AA00
412pxu_B_G170_G171AAAAA00700.24AA00
422pxu_B_G171_C172AAAAA00530.29AA00
432pxu_B_C172_A173AAwAA01850.10AA01
442pxu_B_A173_G174AAAAA00620.25AA00
452pxu_B_G174_C175AAAAA00850.12AA00
462pxu_B_C175_G176AAAAA00840.19AA00
472pxu_B_G176_C177AAAAA00770.22AA00
482pxu_B_C177_C178AAAAA00830.24AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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