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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Variant 9 of Ribonucleoprotein Core of the E. Coli Signal Recognition Particle

Results of the assignment of 46 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012pxl_B_G130_C131AAAAA0090.39AA00
022pxl_B_C131_G132AAAAA00810.19AA00
032pxl_B_G132_G133AAAAA00800.14AA00
042pxl_B_G133_G134AAAAA00670.24AA00
052pxl_B_G134_U135AAAAA08870.13AA08
062pxl_B_U135_G136AAAAA00760.17AA00
072pxl_B_G136_U137AAAAA00750.26AA00
082pxl_B_U137_U138AAAAA00930.15AA00
092pxl_B_U138_U139AAAAA00470.23AA00
102pxl_B_U139_A140NANNANT01.39OP17
112pxl_B_A140_C141AAAAA08680.22AA08
122pxl_B_C141_C142AAAAA00100.52AA00
132pxl_B_C142_A143NANNANT00.82OP06
142pxl_B_A143_G144NANNANT00.67OP29
152pxl_B_G144_G145AAAAA00660.20AA00
162pxl_B_G145_U146AAAAA00870.16AA00
172pxl_B_U146_C147AAAAA00630.48AA00
182pxl_B_C147_A148AAuAA13930.20AA13
192pxl_B_A148_G149AAAAA08270.49AA08
202pxl_B_G149_G150AAAAA00550.34AA00
212pxl_B_G150_U151AAAAA00780.30AA00
222pxl_B_U151_C152AAAAA00960.15AA00
232pxl_B_C152_C153AAAAA00750.23AA00
242pxl_B_C153_G154AAAAA00800.27AA00
252pxl_B_G154_A155OPNOP03880.06OP03
262pxl_B_A155_A156AAAAA08860.33AA08
272pxl_B_A156_A157AAAAA00380.32AA00
282pxl_B_A157_G158AAwAA05820.15AA05
292pxl_B_G158_G159AAwAA01510.23AA01
302pxl_B_G159_A160AAAAA08260.33AA08
312pxl_B_A160_A161AAAAA00760.19AA00
322pxl_B_A161_G162AAAAA00310.48AA00
332pxl_B_G162_C163AAuAA12660.45AA12
342pxl_B_C163_A164AAAAA00760.30AA00
352pxl_B_A164_G165AAAAA00540.39AA00
362pxl_B_G165_C166AAAAA00660.33AA00
372pxl_B_C166_C167AAAAA00880.16AA00
382pxl_B_C167_A168AAAAA00550.35AA00
392pxl_B_A168_A169AAAAA00400.31AA00
402pxl_B_A169_G170AAAAA00730.17AA00
412pxl_B_G170_G171AAAAA00750.25AA00
422pxl_B_G171_C172AAAAA00710.25AA00
432pxl_B_C172_A173AAwAA01940.16AA01
442pxl_B_A173_C174AAAAA00880.14AA00
452pxl_B_C174_U175AAAAA00820.30AA00
462pxl_B_U175_U176AAAAA00820.19AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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