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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Variant 8 of Ribonucleoprotein Core of the E. Coli Signal Recognition Particle

Results of the assignment of 48 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012pxk_B_G130_G131AAAAA00590.22AA00
022pxk_B_G131_G132AAAAA00760.22AA00
032pxk_B_G132_U133AAAAA00690.33AA00
042pxk_B_U133_G134AAAAA00810.19AA00
052pxk_B_G134_U135AAAAA00890.12AA00
062pxk_B_U135_G136AAAAA00870.12AA00
072pxk_B_G136_U137AAAAA00760.19AA00
082pxk_B_U137_U138AAAAA00910.15AA00
092pxk_B_U138_U139AAAAA00550.23AA00
102pxk_B_U139_A140NANNANT01.41OP17
112pxk_B_A140_C141AAAAA08820.13AA08
122pxk_B_C141_C142AAAAA0060.62AA00
132pxk_B_C142_A143OPNOP06460.59OP06
142pxk_B_A143_G144NANNANT00.65OP29
152pxk_B_G144_G145AAAAA00670.20AA00
162pxk_B_G145_U146AAAAA00830.18AA00
172pxk_B_U146_C147AAAAA08710.46AA08
182pxk_B_C147_A148AAuAA13810.21AA13
192pxk_B_A148_G149AAAAA04210.68AA04
202pxk_B_G149_G150AAAAA00570.37AA00
212pxk_B_G150_U151AAAAA00640.27AA00
222pxk_B_U151_C152AAAAA00830.28AA00
232pxk_B_C152_C153AAAAA08930.14AA08
242pxk_B_C153_G154AAAAA00800.25AA00
252pxk_B_G154_A155OPNOP04600.33OP04
262pxk_B_A155_A156AAAAA08770.31AA08
272pxk_B_A156_A157AAAAA00220.34AA00
282pxk_B_A157_G158AAwAA05790.29AA05
292pxk_B_G158_G159AAwAA06840.21AA06
302pxk_B_G159_A160AAAAA08690.23AA08
312pxk_B_A160_A161AAAAA08830.30AA08
322pxk_B_A161_G162AAAAA00420.53AA00
332pxk_B_G162_C163AAuAA12660.48AA12
342pxk_B_C163_A164AAAAA00710.28AA00
352pxk_B_A164_G165AAAAA00540.42AA00
362pxk_B_G165_C166AAAAA00520.32AA00
372pxk_B_C166_C167AAAAA00800.15AA00
382pxk_B_C167_A168AAAAA00470.35AA00
392pxk_B_A168_A169AAAAA00540.30AA00
402pxk_B_A169_G170AAAAA00920.16AA00
412pxk_B_G170_G171AAAAA00640.22AA00
422pxk_B_G171_C172AAAAA00720.24AA00
432pxk_B_C172_A173AAwAA01880.13AA01
442pxk_B_A173_C174AAAAA08900.19AA08
452pxk_B_C174_G175AAAAA00860.15AA00
462pxk_B_G175_U176AAAAA00870.18AA00
472pxk_B_U176_C177AAAAA00860.15AA00
482pxk_B_C177_C178AAAAA00690.18AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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