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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Variant 5 of Ribonucleoprotein Core of the E. Coli Signal Recognition Particle

Results of the assignment of 48 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012pxf_B_G130_G131AAAAA00560.21AA00
022pxf_B_G131_G132AAAAA08590.28AA08
032pxf_B_G132_G133AAAAA00800.25AA00
042pxf_B_G133_G134AAAAA00840.22AA00
052pxf_B_G134_U135AAAAA00860.11AA00
062pxf_B_U135_G136AAAAA08850.18AA08
072pxf_B_G136_U137AAAAA00760.24AA00
082pxf_B_U137_U138AAAAA00940.16AA00
092pxf_B_U138_U139AAAAA00570.23AA00
102pxf_B_U139_A140NANNANT01.35OP17
112pxf_B_A140_C141AAAAA08360.25AA08
122pxf_B_C141_C142AAAAA00120.53AA00
132pxf_B_C142_A143OPNOP06650.58OP06
142pxf_B_A143_G144NANNANT00.65OP30
152pxf_B_G144_G145AAAAA00790.17AA00
162pxf_B_G145_U146AAAAA00870.14AA00
172pxf_B_U146_C147AAAAA08750.36AA08
182pxf_B_C147_A148AAuAA13650.29AA13
192pxf_B_A148_G149AAAAA08130.56AA08
202pxf_B_G149_G150AAAAA00620.34AA00
212pxf_B_G150_U151AAAAA00760.35AA00
222pxf_B_U151_C152AAAAA00750.30AA00
232pxf_B_C152_C153AAAAA00910.12AA00
242pxf_B_C153_G154AAAAA00840.24AA00
252pxf_B_G154_A155OPNOP04550.34OP04
262pxf_B_A155_A156AAAAA08800.33AA08
272pxf_B_A156_A157AAAAA08590.36AA08
282pxf_B_A157_G158AAwAA05510.32AA05
292pxf_B_G158_G159AAwAA01640.30AA01
302pxf_B_G159_A160AAAAA08470.29AA08
312pxf_B_A160_A161AAAAA08800.25AA08
322pxf_B_A161_G162AAAAA00140.50AA00
332pxf_B_G162_C163AAuAA12810.44AA12
342pxf_B_C163_A164AAAAA00830.23AA00
352pxf_B_A164_G165AAAAA00610.47AA00
362pxf_B_G165_C166AAAAA08850.17AA08
372pxf_B_C166_C167AAAAA00810.20AA00
382pxf_B_C167_A168AAAAA00310.42AA00
392pxf_B_A168_A169AAAAA00650.31AA00
402pxf_B_A169_G170AAAAA00890.14AA00
412pxf_B_G170_G171AAAAA00720.26AA00
422pxf_B_G171_C172AAAAA00500.27AA00
432pxf_B_C172_A173AAwAA06870.30AA06
442pxf_B_A173_C174AAAAA00750.20AA00
452pxf_B_C174_U175AAAAA00930.20AA00
462pxf_B_U175_U176AAAAA00930.14AA00
472pxf_B_U176_C177AAAAA00780.21AA00
482pxf_B_C177_C178AAAAA00800.19AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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