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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Variant 1 of Ribonucleoprotein Core of the E. Coli Signal Recognition Particle

Results of the assignment of 48 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012pxd_B_G130_G131AAAAA00720.16AA00
022pxd_B_G131_G132AAAAA00690.22AA00
032pxd_B_G132_G133AAAAA00910.23AA00
042pxd_B_G133_C134AAAAA00810.21AA00
052pxd_B_C134_U135AAAAA00930.11AA00
062pxd_B_U135_G136AAAAA08840.20AA08
072pxd_B_G136_U137AAAAA00800.23AA00
082pxd_B_U137_U138AAAAA00940.14AA00
092pxd_B_U138_U139AAAAA00560.24AA00
102pxd_B_U139_A140NANNANT01.39OP17
112pxd_B_A140_C141AAAAA08580.28AA08
122pxd_B_C141_C142AAAAA04380.53AA04
132pxd_B_C142_A143OPNOP06150.78OP06
142pxd_B_A143_G144NANNANT00.70OP29
152pxd_B_G144_G145AAAAA00780.18AA00
162pxd_B_G145_U146AAAAA00860.15AA00
172pxd_B_U146_C147AAAAA08730.46AA08
182pxd_B_C147_A148AAuAA13810.23AA13
192pxd_B_A148_G149AAAAA08240.50AA08
202pxd_B_G149_G150AAAAA00560.37AA00
212pxd_B_G150_U151AAAAA00670.28AA00
222pxd_B_U151_C152AAAAA00660.30AA00
232pxd_B_C152_C153AAAAA08890.14AA08
242pxd_B_C153_G154AAAAA00690.26AA00
252pxd_B_G154_A155OPNOP04560.34OP04
262pxd_B_A155_A156AAAAA00590.37AA00
272pxd_B_A156_A157AAAAA00180.41AA00
282pxd_B_A157_G158AAwAA05730.29AA05
292pxd_B_G158_G159AAwAA06810.20AA06
302pxd_B_G159_A160AAAAA08160.35AA08
312pxd_B_A160_A161AAAAA00640.26AA00
322pxd_B_A161_G162AAAAA08360.47AA08
332pxd_B_G162_C163AAuAA13820.17AA13
342pxd_B_C163_A164AAAAA00800.25AA00
352pxd_B_A164_G165AAAAA00610.45AA00
362pxd_B_G165_C166AAAAA00610.28AA00
372pxd_B_C166_C167AAAAA00830.21AA00
382pxd_B_C167_A168AAAAA00330.39AA00
392pxd_B_A168_A169AAAAA00510.30AA00
402pxd_B_A169_G170AAAAA00860.14AA00
412pxd_B_G170_G171AAAAA00860.21AA00
422pxd_B_G171_C172AAAAA00630.28AA00
432pxd_B_C172_A173AAwAA01960.12AA01
442pxd_B_A173_G174AAAAA00850.15AA00
452pxd_B_G174_U175AAAAA00810.20AA00
462pxd_B_U175_U176AAAAA00860.19AA00
472pxd_B_U176_C177AAAAA00920.17AA00
482pxd_B_C177_C178AAAAA00780.25AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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